Jatropha Genome Database

JcCB0544161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0544161.10 + phase: 0 
         (443 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034521001 assembled CDS                                       384   e-107
GSVIVT01033746001 assembled CDS                                       195   4e-50
GSVIVT01025297001 assembled CDS                                        70   3e-12

>GSVIVT01034521001 assembled CDS
          Length = 361

 Score =  384 bits (985), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/438 (50%), Positives = 266/438 (60%), Gaps = 81/438 (18%)

Query: 10  MLPGGSPFGGLDLEGAVRIHHQTQYPHAIHNQQRPIHRQGSSVHPSIH-EGFPLTIGALN 68
           M+PGG+P+GGLDL+GA RIHH     H +H Q     RQG+  H SIH E FPLT+G++ 
Sbjct: 1   MIPGGAPYGGLDLQGATRIHHHQHP-HNLHQQHHSHSRQGTMNHSSIHHEVFPLTMGSMQ 59

Query: 69  NSDQTISKTNYNKGEKMKNSASDEDEPSYTEDDGNGHSE---GKKGLPWQRVKWTDKMVR 125
           + DQ+IS  +YNKGEK K   SDEDEPS+ ED  +GH++   GKKG              
Sbjct: 60  DCDQSISMADYNKGEKGKALTSDEDEPSFNEDAIDGHNDPNRGKKG-------------- 105

Query: 126 LLITAVSYIGEDMSSDGDGGVRRKLAILQKKGKWKLISKVMAERGFHVSRQQCEDKFNDL 185
                                 RK AILQKKGKWK +SKVMAERG +VS QQCEDKFNDL
Sbjct: 106 ----------------------RKYAILQKKGKWKSVSKVMAERGHYVSPQQCEDKFNDL 143

Query: 186 NKRYKKLNDMLGRGTSCEVVENPALLVHIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNS 245
           NKRYK+LND+LGRGTSC+VVENPALL  +D+LTEK K+DVRKILSSKHLFYEEMCSYHN 
Sbjct: 144 NKRYKRLNDVLGRGTSCQVVENPALLDMMDHLTEKTKEDVRKILSSKHLFYEEMCSYHNG 203

Query: 246 NRLHLPHDPALQHSLQLALRSKDDHDNDDIQRNQKYDLDEDDQEVETDDHDEFEEKHPSH 305
           NRLHLP DPALQ SLQLALRS+D+HDN                                 
Sbjct: 204 NRLHLPPDPALQRSLQLALRSRDEHDNR-------------------------------- 231

Query: 306 GNDRGIYGVLGGSMKRLRHGRGCKDSCFWNPSQDGNKGSYPHLQIAQVDMNQMSTESTKA 365
                   V G  +KR++ G+  +D  F NPS   +    PH Q A VDMNQ+    +  
Sbjct: 232 --------VYGMPVKRMKQGQNQEDFSFGNPSNSQDCNRSPHPQSAHVDMNQVYPVGSAE 283

Query: 366 AWLHKQWMESQTXXXXXXXXXXXXXXXXXXXXRFKWKRFSRKRDHELEKLRVENERMKLE 425
             L KQWM S++                    RFKW+RF RK+D +L+KLR+ENERMKLE
Sbjct: 284 DLLQKQWMRSRSLQLEEQKLQIQEQMLELEKQRFKWQRFCRKKDRDLDKLRMENERMKLE 343

Query: 426 NERIALELKRKEMGIVFN 443
           NER+ALELKRKEMG  +N
Sbjct: 344 NERMALELKRKEMGASYN 361


>GSVIVT01033746001 assembled CDS
          Length = 410

 Score =  195 bits (495), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 98/170 (57%), Positives = 128/170 (75%), Gaps = 5/170 (2%)

Query: 79  YNKGEKMKNSASDEDEPSYTEDDGNGHSEGKKGL-PWQRVKWTDKMVRLLITAVSYIGED 137
           Y    K + + SDEDEP  T DD    ++GK+ + PW R+KWTD MVRLLI AV YIG++
Sbjct: 59  YVTKAKQQLTLSDEDEPGLTGDDST--ADGKRKVSPWHRMKWTDNMVRLLIMAVFYIGDE 116

Query: 138 MSSD-GDGGVRRKLA-ILQKKGKWKLISKVMAERGFHVSRQQCEDKFNDLNKRYKKLNDM 195
             S+  D   ++K   +LQKKGKWK +S+ M E+GF+VS QQCEDKFNDLNKRYK++ND+
Sbjct: 117 GGSECSDPSAKKKTGGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDI 176

Query: 196 LGRGTSCEVVENPALLVHIDYLTEKEKDDVRKILSSKHLFYEEMCSYHNS 245
           LG+GT+C VVEN +LL  +D L+ K KD+VRK+L+SKHLF+ EMC+YHNS
Sbjct: 177 LGKGTACRVVENQSLLDTMDQLSPKMKDEVRKLLNSKHLFFREMCAYHNS 226



 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 340 GNKGSYPHLQIAQVDMNQMSTE-------STKAAWLHKQWMESQTXXXXXXXXXXXXXXX 392
             KG +P    + + M Q+S+E        TK+    KQWM S+                
Sbjct: 255 ARKGLFPSPSPSPL-MRQLSSEVMSVLQDGTKSTLEKKQWMRSRMMQLEEQRVSYQCKAF 313

Query: 393 XXXXXRFKWKRFSRKRDHELEKLRVENERMKLENERIALELKRKEMGIVF 442
                R KW +FS K++ E+E+ ++ N+R +LENER+AL L++KE G  F
Sbjct: 314 ELEKQRLKWVKFSSKKEREMEREKLVNQRKRLENERMALLLRQKEHGGWF 363


>GSVIVT01025297001 assembled CDS
          Length = 205

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 46/201 (22%)

Query: 239 MCSYHNSNRLHLPHDPALQHSLQ-LALRSKDDHDNDDIQRNQKYDLDEDDQEVETDDHDE 297
           MC+YHN   +   HD  LQ     LA  SKD++ +++ +  +  D D DD      D++E
Sbjct: 1   MCAYHNGKSISNCHDVDLQGYFSPLARSSKDNNGSEEEEAEENEDFDFDDL-----DNEE 55

Query: 298 FEEKHPSHGNDRGIYGVLGGSMKRLRHGRGCKDSCFWNPSQDGNKGSYPHLQIAQVDMNQ 357
           ++       N  G    +GG                                  +V+M  
Sbjct: 56  YD-------NADGHAQSMGG---------------------------------FEVEMAG 75

Query: 358 MSTESTKAAWLHKQWMESQTXXXXXXXXXXXXXXXXXXXXRFKWKRFSRKRDHELEKLRV 417
           +  +  K+ W  K+W++++                     RFKW RFS K+  +LE  R+
Sbjct: 76  IFEDPAKSPWEQKEWIKNRMLQLQEQMVTIMAQGFELEKQRFKWLRFSSKKGRDLEDSRL 135

Query: 418 ENERMKLENERIALELKRKEM 438
           ENERM LENER+ LELK+KE+
Sbjct: 136 ENERMGLENERLVLELKQKEL 156