Jatropha Genome Database

JcCB0543811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0543811.10 + phase: 0 /partial
         (148 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026227001 assembled CDS                                       210   2e-55
GSVIVT01029337001 assembled CDS                                       209   3e-55

>GSVIVT01026227001 assembled CDS
          Length = 329

 Score =  210 bits (535), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/117 (85%), Positives = 105/117 (89%)

Query: 27  EHLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 86
           EHLGLP+FNTVAEAKAET+ANASVIYVPPPF            LDLVVCITEGIPQHDMV
Sbjct: 79  EHLGLPIFNTVAEAKAETRANASVIYVPPPFAAAAIMEAVEAELDLVVCITEGIPQHDMV 138

Query: 87  RVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 143
           +VKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGR+GIVSRSGTLTYEAV
Sbjct: 139 KVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAV 195


>GSVIVT01029337001 assembled CDS
          Length = 336

 Score =  209 bits (532), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/117 (85%), Positives = 104/117 (88%)

Query: 27  EHLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 86
           EHLGLPVFNTVAEAKAETKAN SVIYVPPPF            LDLVVCITEGIPQHDMV
Sbjct: 85  EHLGLPVFNTVAEAKAETKANTSVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 144

Query: 87  RVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 143
           +VKAALN+Q+KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGR+GIVSRSGTLTYEAV
Sbjct: 145 KVKAALNRQTKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAV 201