Jatropha Genome Database

JcCB0543221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0543221.10 - phase: 2 /partial
         (149 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024575001 assembled CDS                                       217   1e-57
GSVIVT01032675001 assembled CDS                                       164   2e-41
GSVIVT01013850001 assembled CDS                                        75   1e-14
GSVIVT01026137001 assembled CDS                                        71   2e-13

>GSVIVT01024575001 assembled CDS
          Length = 228

 Score =  217 bits (553), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/146 (71%), Positives = 123/146 (84%)

Query: 1   GLKTFSLPDLANDYSALEPVISAEIMQLHHQKHHQTYITNYNKSLELLNEAMNKGDSASV 60
            LKTFSLPDL  DY ALEP++S EIM+LHH KHH TYITNY K+L  L+EA++KGDS+S+
Sbjct: 24  ALKTFSLPDLPYDYRALEPLVSGEIMELHHLKHHLTYITNYYKALHQLDEAISKGDSSSI 83

Query: 61  VKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTE 120
           ++LQS+IKFNGGGHINHSIF KNLAPV EGGGEPP+G LG A    +GSLE L+QKI+ E
Sbjct: 84  LRLQSSIKFNGGGHINHSIFRKNLAPVIEGGGEPPNGLLGVAFHSSYGSLEALMQKINAE 143

Query: 121 GAAVQGSGWVWLGLDKEAKKLVVETT 146
           GAA+QGSGWVWL LDKE K+L +ETT
Sbjct: 144 GAALQGSGWVWLALDKEMKRLQIETT 169


>GSVIVT01032675001 assembled CDS
          Length = 154

 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/96 (81%), Positives = 86/96 (89%)

Query: 52  MNKGDSASVVKLQSAIKFNGGGHINHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLE 111
           M KGDS++VVKLQ AIKFNGGGH+NHSIFWKNL PV EGGGEPP GSLGWAID  FGS+E
Sbjct: 1   MEKGDSSTVVKLQGAIKFNGGGHVNHSIFWKNLTPVHEGGGEPPKGSLGWAIDTHFGSME 60

Query: 112 KLIQKISTEGAAVQGSGWVWLGLDKEAKKLVVETTA 147
            L+ KI++EGAAVQGSGWVWLGLDK+ KKLVVETTA
Sbjct: 61  ALVAKINSEGAAVQGSGWVWLGLDKDLKKLVVETTA 96


>GSVIVT01013850001 assembled CDS
          Length = 306

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 25/147 (17%)

Query: 15  SALEPVISAEIMQLHHQKHHQTYITNYNKSL-----------ELLNEAMNKGDSASVVKL 63
           SALEP +S E ++ H  KHH+ Y+ N N+ +           +++    NKGD       
Sbjct: 58  SALEPHMSRETLEYHWGKHHRGYVDNLNRQIVGTELDGMTLEDIITITYNKGDLLPA--- 114

Query: 64  QSAIKFNGGGHI-NHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTEGA 122
                FN    + NH+ FW+++ P   GGG  P G L   I  DFGS E+ +++     +
Sbjct: 115 -----FNNAAQVWNHTSFWESMKP---GGGGEPSGDLLELIKRDFGSFERFVEEFKLAAS 166

Query: 123 AVQGSGWVWLGLDKEAKKLVVETTAKP 149
              GSGW WL    +A +L V     P
Sbjct: 167 TQFGSGWAWLAY--KANRLDVGNAVNP 191


>GSVIVT01026137001 assembled CDS
          Length = 321

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 8/137 (5%)

Query: 16  ALEPVISAEIMQLHHQKHHQTYITNYNKSLE----LLNEAMNKGDSASVVKLQSAIKFNG 71
           ALEP +S   +++H   HH+ Y+   NK LE    L    +++    +        +FN 
Sbjct: 119 ALEPHMSRRTLEMHWGDHHRGYVEGLNKQLEKDDILYGHTLDELVKVTYNNGNPLPEFNN 178

Query: 72  GGHI-NHSIFWKNLAPVREGGGEPPHGSLGWAIDEDFGSLEKLIQKISTEGAAVQGSGWV 130
              + NH  FW+++ P   GGG+ P   L   I++DFGS     +K       + GSGWV
Sbjct: 179 AAQVWNHDFFWESMQP---GGGDMPRLGLLEQIEKDFGSFTNFKEKFLEAALTLFGSGWV 235

Query: 131 WLGLDKEAKKLVVETTA 147
           WL L +  + L V  T+
Sbjct: 236 WLVLKRNERCLAVVKTS 252