Jatropha Genome Database
- JcCB0542281.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0542281.10 - phase: 0 /pseudo/partial
(177 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01006626001 assembled CDS 100 6e-22
GSVIVT01004328001 assembled CDS 99 7e-22
GSVIVT01006042001 assembled CDS 97 5e-21
GSVIVT01006043001 assembled CDS 97 5e-21
GSVIVT01015745001 assembled CDS 95 2e-20
GSVIVT01015777001 assembled CDS 94 3e-20
GSVIVT01009062001 assembled CDS 92 2e-19
GSVIVT01006044001 assembled CDS 88 2e-18
GSVIVT01009052001 assembled CDS 82 1e-16
GSVIVT01015743001 assembled CDS 72 1e-13
GSVIVT01010817001 assembled CDS 55 1e-08
GSVIVT01010812001 assembled CDS 55 2e-08
GSVIVT01016409001 assembled CDS 54 3e-08
GSVIVT01016422001 assembled CDS 54 4e-08
GSVIVT01016411001 assembled CDS 49 1e-06
>GSVIVT01006626001 assembled CDS
Length = 848
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 65 DFVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSD 124
DF FE I DGLP +D+ ++ D ++C ST CLA F +LLA+LN+SS+VPPV+CI+SD
Sbjct: 460 DFRFEAIPDGLP-PSDLDATQDVPALCDSTRKNCLAPFRDLLARLNSSSDVPPVSCIISD 518
Query: 125 GIMTFTLDAAQEIGVPGVLFW 145
G+M+F ++AA+E+G+P V FW
Sbjct: 519 GVMSFAIEAAEELGIPEVQFW 539
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 65 DFVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASS-NVPPVTCIVS 123
DF FE+I DGLP + ++ D ++ ST+ C F LLAKLN + +PPVTC++
Sbjct: 65 DFRFESIPDGLPPPDNPDATQDIIALSISTANNCFIPFRNLLAKLNGGAPEIPPVTCVIY 124
Query: 124 DGIMTFTLDAAQEIGVPGVLFW 145
DG+M+F L+AAQ++GVPGV FW
Sbjct: 125 DGLMSFALEAAQQVGVPGVAFW 146
>GSVIVT01004328001 assembled CDS
Length = 414
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 65 DFVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSD 124
DF FE I DGLP +D+ ++ D ++C ST CLA F +LLA+LN+SS+VPPV+CI+SD
Sbjct: 65 DFRFEAIPDGLP-PSDLDATQDVPALCDSTRKNCLAPFRDLLARLNSSSDVPPVSCIISD 123
Query: 125 GIMTFTLDAAQEIGVPGVLFW 145
G+M+F + AA+E+G+P V FW
Sbjct: 124 GVMSFAIQAAEELGIPEVQFW 144
>GSVIVT01006042001 assembled CDS
Length = 336
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 6 TDKSHVVCHPLHSSRSHKPNAXISKTTPYKRFLHYLCPYRVQSETXXXXXXXXXXXXXXD 65
T K H+VC P + P ++K K F D
Sbjct: 28 TRKPHIVCVPFPAQGHVIPMMQLAKLLHSKGFCITFVNTEFNHRRLVRSKGEDWAKGFDD 87
Query: 66 FVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSDG 125
F FETI+DGLP ++ ++ +P +C CLA F LLAKLN+S VPPVTCI+SDG
Sbjct: 88 FWFETISDGLP-PSNPDATQNPTMLCYHVPKHCLAPFRHLLAKLNSSPEVPPVTCIISDG 146
Query: 126 IMTFTLDAAQEIGVPGVLFW 145
IM+F L AA+E+G+P V FW
Sbjct: 147 IMSFALKAAEELGIPEVQFW 166
>GSVIVT01006043001 assembled CDS
Length = 691
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 65 DFVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSD 124
DF FETI DGLP +D +S D S+C ST CL F +LLAK+ +SS VPPVTCI+SD
Sbjct: 66 DFRFETIPDGLP-QSDRDASQDIPSLCDSTRKNCLPPFKDLLAKIGSSSEVPPVTCIISD 124
Query: 125 GIMTFTLDAAQEIGVPGVLFW 145
G+M+F + AA+E+G+PG W
Sbjct: 125 GVMSFAIKAAKELGIPGFQLW 145
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 109 LNASSNVPPVTCIVSDGIMTFTLDAAQEIGVPGVLFW 145
LN+ S VPPVT IVSDG+M+F + AA+E+G+P V FW
Sbjct: 485 LNSLSEVPPVTRIVSDGVMSFAIKAAEELGIPVVQFW 521
>GSVIVT01015745001 assembled CDS
Length = 202
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 6 TDKSHVVCHPLHSSRSHKPNAXISKTTPYKRFLHYLCPYRVQSETXXXXXXXXXXXXXXD 65
+DK HVV P + P ++K K F + D
Sbjct: 7 SDKPHVVLIPYPAQGHVNPMLKLAKLLHNKGFFVSFVNTEYNHKRLLRSRGPNSLDGLSD 66
Query: 66 FVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLN--ASSNVPPVTCIVS 123
F FETI DGLP +D ++ D S+C ST+ CLA F L+ KLN + S PPV+CIVS
Sbjct: 67 FRFETIPDGLP-PSDADATQDIPSLCVSTTKNCLAPFCALITKLNDPSYSPGPPVSCIVS 125
Query: 124 DGIMTFTLDAAQEIGVPGVLFWNT 147
DG+M+FTLDAA++ GVP V+FW T
Sbjct: 126 DGVMSFTLDAAEKFGVPEVVFWTT 149
>GSVIVT01015777001 assembled CDS
Length = 511
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Query: 65 DFVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLN--ASSNVPPVTCIV 122
DF FETI DGLP +D + S+C+STS LA F L++KLN +SS PPVTCIV
Sbjct: 302 DFRFETIPDGLP-PSDADITQPTASVCESTSKNSLAPFCNLISKLNDPSSSAGPPVTCIV 360
Query: 123 SDGIMTFTLDAAQEIGVPGVLFWNT 147
SDG+M+FTLDAA++ GVP VLFW T
Sbjct: 361 SDGVMSFTLDAAEKFGVPEVLFWTT 385
>GSVIVT01009062001 assembled CDS
Length = 654
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 7 DKSHVVCHPLHSSRSHKPNAXISKTTPYKRFLHYLCPYRVQSETXXXXXXXXXXXXXXDF 66
+K H VC P + P ++K ++ F F
Sbjct: 8 EKPHAVCIPYPAQGHINPMLKLAKFLHFRGFHITFVNTEYNHNRLLKSRGPDSLKGIPSF 67
Query: 67 VFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSDGI 126
F+TI DGLP ++V ++ D ++C ST+ CL F +LL+ LN PPVTCIVSDG
Sbjct: 68 QFKTIPDGLP-PSNVDATQDTPALCVSTTKHCLPPFRDLLSNLNHDG--PPVTCIVSDGA 124
Query: 127 MTFTLDAAQEIGVPGVLFWNT 147
M+FTLDAAQE+GVP VLFW T
Sbjct: 125 MSFTLDAAQELGVPEVLFWTT 145
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 3/82 (3%)
Query: 66 FVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSDG 125
F F+TI DGL L ++V ++ D ++C ST CL F +LL+ LN PPVTCIVSDG
Sbjct: 436 FQFKTIPDGL-LPSNVDATQDIPALCVSTRKHCLPPFRDLLSNLNHDG--PPVTCIVSDG 492
Query: 126 IMTFTLDAAQEIGVPGVLFWNT 147
M+FTLDAAQE+GVP VLFW T
Sbjct: 493 AMSFTLDAAQELGVPEVLFWTT 514
>GSVIVT01006044001 assembled CDS
Length = 575
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 65 DFVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASS-NVPPVTCIVS 123
DF FE+I DGLP + ++ D ++ ST+ C F LLAKLN+ + +PPVTC++
Sbjct: 65 DFRFESIPDGLPPPDNPDATQDIIALSISTANNCFIPFRNLLAKLNSGAPEIPPVTCVIY 124
Query: 124 DGIMTFTLDAAQEIGVPGVLFW 145
DG+M+F L+AAQ++GVPGV FW
Sbjct: 125 DGLMSFALEAAQQVGVPGVAFW 146
>GSVIVT01009052001 assembled CDS
Length = 660
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 66 FVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSDG 125
F FETI DGL +DV ++ D S+C ST L F LL+KLN N PPVTCIVSD
Sbjct: 321 FQFETIPDGLQ-PSDVNATQDIPSLCVSTKNNLLPPFRCLLSKLN--HNGPPVTCIVSDS 377
Query: 126 IMTFTLDAAQEIGVPGVLFW 145
+T TLDAAQE+G+PG+LFW
Sbjct: 378 SLTSTLDAAQELGIPGLLFW 397
>GSVIVT01015743001 assembled CDS
Length = 321
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 5 ITDKSHVVCHPLHSSRSHKPNAXISKTTPYKRFLHYLCPYRVQSETXXXXXXXXXXXXXX 64
+ DK HVVC P + KP ++K Y+ F +
Sbjct: 1 MGDKPHVVCIPFPAQGHIKPMLKLAKLLHYRGFHITFVNTEFNHKRLLRSRGPHALDGMP 60
Query: 65 DFVFETITDGLPLATDVGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSD 124
F FE+I DGLP D SSNVPPVTCIVSD
Sbjct: 61 GFCFESIPDGLPPLNDA-----------------------------PSSNVPPVTCIVSD 91
Query: 125 GIMTFTLDAAQEIGVPGVLFWNT 147
G M FTL A++E+G+P VLFW T
Sbjct: 92 GSMCFTLKASEELGIPNVLFWTT 114
>GSVIVT01010817001 assembled CDS
Length = 452
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 66 FVFETITDGLPLAT-DVGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSD 124
F F+TI+DGLPL G+ L +TK L F E++ SS+ PVTCI++D
Sbjct: 88 FRFQTISDGLPLDRPRTGAGLRDMMDGIKATTKPL--FREMVISWCRSSD--PVTCIIAD 143
Query: 125 GIMTFTLDAAQEIGVP 140
G+M+F +D A E+GVP
Sbjct: 144 GLMSFAIDVANEVGVP 159
>GSVIVT01010812001 assembled CDS
Length = 396
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 66 FVFETITDGLPLATD-VGSSLDPESICKSTSTKCLASFLELLAKLNASSNVPPVTCIVSD 124
F F+TI+DGLPL G+ L +TK L F E++ SS+ PVTCI++D
Sbjct: 43 FRFQTISDGLPLDRPWTGAGLRDMMDGIKATTKPL--FREMVISWCQSSD--PVTCIIAD 98
Query: 125 GIMTFTLDAAQEIGVP 140
G+M+F +D A E+GVP
Sbjct: 99 GLMSFAIDVANEVGVP 114
>GSVIVT01016409001 assembled CDS
Length = 507
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 66 FVFETITDGLPLA--TDVGSSLDPESICKSTSTKCLASFLELLAKL--NASSNVPPVTCI 121
F FETI+DGLP+ LD I T F+E++ + S PP+TCI
Sbjct: 66 FRFETISDGLPMEHPRTAEQFLD---IVDGVKTTTAPLFMEMMISWCRSTSDTRPPLTCI 122
Query: 122 VSDGIMTFTLDAAQEIGVPGVLF 144
++D +M+F D A E+G+P V+F
Sbjct: 123 MADQLMSFATDVANEVGLPIVIF 145
>GSVIVT01016422001 assembled CDS
Length = 482
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 10/84 (11%)
Query: 66 FVFETITDGLPLATD---VGSS-LDPESICKSTSTKCLASFLEL-LAKLNASSNVPPVTC 120
F F+TI+DGL TD G +D K+T+ F EL +++ S +PPV C
Sbjct: 66 FRFQTISDGL--TTDHPRTGERVMDLFEGLKATAKPI---FRELVISRGQGSDTLPPVNC 120
Query: 121 IVSDGIMTFTLDAAQEIGVPGVLF 144
I++DGIM+FT+D A E+G+P + F
Sbjct: 121 IIADGIMSFTIDIANEVGIPIISF 144
>GSVIVT01016411001 assembled CDS
Length = 349
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 105 LLAKLNASSNVPPVTCIVSDGIMTFTLDAAQEIGVPGVLF 144
++++ S PPV+CI++DG+M+FT+D A E+G+P + F
Sbjct: 1 MISRGQGSDTRPPVSCIIADGMMSFTIDIANEVGIPIISF 40