Jatropha Genome Database

JcCB0539871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0539871.10 + phase: 0 /pseudo
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020215001 assembled CDS                                       195   6e-51
GSVIVT01007789001 assembled CDS                                       185   8e-48
GSVIVT01011634001 assembled CDS                                       123   4e-29
GSVIVT01013121001 assembled CDS                                       118   1e-27
GSVIVT01031857001 assembled CDS                                       117   3e-27
GSVIVT01021260001 assembled CDS                                       103   4e-23
GSVIVT01020754001 assembled CDS                                        87   3e-18

>GSVIVT01020215001 assembled CDS
          Length = 643

 Score =  195 bits (496), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 101/148 (68%), Positives = 107/148 (72%), Gaps = 27/148 (18%)

Query: 1   MVSRSYMNFLDLASGNLLDIPQTPRSLPRVMTVPGIISDADGYGCNDGDSEVSSSICERK 60
           M SRS  NFLDLASG+LLDIP TPR LPRVMT                          RK
Sbjct: 1   MASRSCANFLDLASGSLLDIPHTPRPLPRVMT--------------------------RK 34

Query: 61  IIVANMLPLHAKKD-TNGKWCFSRDEDSLLLQLKDGFSPETEVIYVGSLKADIDASEQEE 119
           IIVANMLPLHA++D    KWCFS DED+LLL LKDGFSPETEVIYVGSLK +IDASEQEE
Sbjct: 35  IIVANMLPLHAQRDKVTAKWCFSLDEDALLLHLKDGFSPETEVIYVGSLKVEIDASEQEE 94

Query: 120 VSQKLLEDFNCVPTFLPQDLQKKFYLGF 147
           V+QKLLEDFNCVPTFLP DL KKFY GF
Sbjct: 95  VAQKLLEDFNCVPTFLPHDLHKKFYHGF 122


>GSVIVT01007789001 assembled CDS
          Length = 717

 Score =  185 bits (469), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 111/149 (74%), Gaps = 25/149 (16%)

Query: 1   MVSRS-YMNFLDLASGNLLDIPQTPRSLPRVMTVPGIISDADGYGCNDGDSEVSSSICER 59
           MVSRS Y +FLD ASG+LL+ PQTPR+LPRVMTVPGIISD                    
Sbjct: 1   MVSRSSYTSFLDAASGDLLNFPQTPRTLPRVMTVPGIISD-------------------- 40

Query: 60  KIIVANMLPLHAKKDTN-GKWCFSRDEDSLLLQLKDGFSPETEVIYVGSLKADIDASEQE 118
              VAN LPL A+KD N G+WCFS DED+LLLQ+KDGFS ET+V+YVGSLK D+D SEQE
Sbjct: 41  ---VANFLPLLAQKDLNTGRWCFSFDEDALLLQMKDGFSSETDVVYVGSLKVDVDTSEQE 97

Query: 119 EVSQKLLEDFNCVPTFLPQDLQKKFYLGF 147
           EV+++LL +FNCVPTFLP DLQKKFY GF
Sbjct: 98  EVAERLLAEFNCVPTFLPPDLQKKFYHGF 126


>GSVIVT01011634001 assembled CDS
          Length = 702

 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 86/150 (57%), Gaps = 27/150 (18%)

Query: 1   MVSRSYMNFLDLASGNLLDIPQTPRSLPRVMTVPGIISDADGYGCNDGDSEVSSSICERK 60
           MVSRSY N L+LASG      +  R +PR+MT                         +R 
Sbjct: 1   MVSRSYSNLLELASGESPSFGRMSRRIPRIMTR------------------------DRL 36

Query: 61  IIVANMLPLHA--KKDTNGKWCFSRDEDSLLLQLKDGFSP-ETEVIYVGSLKADIDASEQ 117
           IIVAN LP+ A  K + N  W FS DE+SLLLQLKDG    E EVIYVG LK +I   EQ
Sbjct: 37  IIVANQLPIRAQRKSENNNGWIFSWDENSLLLQLKDGLGDDEIEVIYVGCLKEEIHPCEQ 96

Query: 118 EEVSQKLLEDFNCVPTFLPQDLQKKFYLGF 147
           +EVSQ LLE F CVPTFLP DL  ++Y GF
Sbjct: 97  DEVSQILLETFKCVPTFLPPDLFTRYYHGF 126


>GSVIVT01013121001 assembled CDS
          Length = 223

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/150 (46%), Positives = 84/150 (56%), Gaps = 30/150 (20%)

Query: 1   MVSRSYMNFLDLASGNLLDIPQTPRSLPRVMTVPGIISDADGYGCNDGDSEVSSSICE-R 59
           MVSRSY N LDL                            D    N   S+  SS+ + R
Sbjct: 1   MVSRSYSNLLDLL---------------------------DDETSNSVTSDAPSSVSQDR 33

Query: 60  KIIVANMLPLHAKK--DTNGKWCFSRDEDSLLLQLKDGFSPETEVIYVGSLKADIDASEQ 117
            IIV N LPL A +  D +G+WCFS DEDSLLLQLKDG   + EV+YVG L+  ID SEQ
Sbjct: 34  MIIVGNQLPLRAHRSSDGSGEWCFSWDEDSLLLQLKDGLGEDVEVLYVGCLREQIDPSEQ 93

Query: 118 EEVSQKLLEDFNCVPTFLPQDLQKKFYLGF 147
           ++V+Q LLE F CVP F+P +L  KFY GF
Sbjct: 94  DDVAQTLLETFKCVPAFIPPELFSKFYHGF 123


>GSVIVT01031857001 assembled CDS
          Length = 577

 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 87/149 (58%), Gaps = 25/149 (16%)

Query: 1   MVSRSYMNFLDLASGNLLDIPQTPRSLPRVMTVPGIISDADGYGCNDGDSEVSSSICE-R 59
           M+SRSY N LDLA+GN   I +  + LPRVMTVPG + + D    N   S+  SS+ + R
Sbjct: 1   MMSRSYTNLLDLATGNFPAIGRERKRLPRVMTVPGNVYELDDDQANSVSSDNPSSVAQDR 60

Query: 60  KIIVANMLPLHAKKDTNGK-WCFSRDEDSLLLQLKDGFSPETEVIYVGSLKADIDASEQE 118
            IIVAN LP+ A +  + + W FS +EDSLLLQLK+                       E
Sbjct: 61  LIIVANQLPVKANRRADDRGWVFSWNEDSLLLQLKE-----------------------E 97

Query: 119 EVSQKLLEDFNCVPTFLPQDLQKKFYLGF 147
           EVSQ LLE F CVPTFLP D+ +KFY GF
Sbjct: 98  EVSQILLETFKCVPTFLPHDVLEKFYHGF 126


>GSVIVT01021260001 assembled CDS
          Length = 784

 Score =  103 bits (256), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 83/131 (63%), Gaps = 7/131 (5%)

Query: 1   MVSRSYMNFLDLASGNLLDIPQTPRSLPRVMTVPGIISDADGYGCNDGDSEVSSSICE-R 59
           M+SRSY N LDLASGN   + Q  R LPRVMTVPG+IS+ D    N   S+V SSI + R
Sbjct: 1   MMSRSYTNLLDLASGNFPLMGQRKR-LPRVMTVPGVISELDDDQANSVTSDVPSSIVQDR 59

Query: 60  KIIVANMLPLHAKKDTNGK-WCFSRDEDSLLLQLKDGFSPETEVIYVGSLKADIDASEQE 118
            IIVAN LP+ AK+  + K W FS DEDSLLLQLKDG   + EV+ +     +   S  +
Sbjct: 60  VIIVANQLPVKAKRRPDNKGWSFSWDEDSLLLQLKDGLPDDMEVLSLW----EAYVSANK 115

Query: 119 EVSQKLLEDFN 129
             SQ+++E  N
Sbjct: 116 IFSQRVIEVLN 126


>GSVIVT01020754001 assembled CDS
          Length = 782

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 2/97 (2%)

Query: 1  MVSRSYMNFLDLASGNLLDIPQTPRSLPRVMTVPGIISDADGYGCNDGDSEVSSSICE-R 59
          M+SRSY N LDLA+GN   I +  + LPRVMTVPG + + D    N   S+  SS+ + R
Sbjct: 1  MMSRSYTNLLDLATGNFPAIGRERKRLPRVMTVPGNVYELDDDQANSVSSDNPSSVAQDR 60

Query: 60 KIIVANMLPLHAKKDTNGK-WCFSRDEDSLLLQLKDG 95
           IIVAN LP+ A +  + + W FS +EDSLLLQLK+G
Sbjct: 61 LIIVANQLPVKANRRADDRGWVFSWNEDSLLLQLKEG 97