Jatropha Genome Database

JcCB0539681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0539681.10 + phase: 0 /partial
         (167 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022128001 assembled CDS                                       278   1e-75
GSVIVT01001372001 assembled CDS                                       202   5e-53
GSVIVT01007345001 assembled CDS                                        53   6e-08

>GSVIVT01022128001 assembled CDS
          Length = 658

 Score =  278 bits (710), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 131/151 (86%), Positives = 139/151 (92%)

Query: 1   VRKNLFGPKDATYSDYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 60
           VRK+LFGPK+ATYS YTCYTGIADFVPADI+SVGYRVFLGHKQYFVSSDVGAGKMQWYAF
Sbjct: 245 VRKSLFGPKEATYSGYTCYTGIADFVPADIDSVGYRVFLGHKQYFVSSDVGAGKMQWYAF 304

Query: 61  HKEPPGGVDRPNGKKERLLKIFEGWCDNVIDLLLATDEDAILRRDIYDRTPTLTWGRGRV 120
           + EP GGVD P GKKERLLKIF GWCDNVIDL+LATDE+AILRRDIYDRTPT TWGRGRV
Sbjct: 305 YNEPAGGVDGPEGKKERLLKIFGGWCDNVIDLILATDEEAILRRDIYDRTPTFTWGRGRV 364

Query: 121 TLLGDSVHAMQPNMGQGGCMAIEVNPYFLLE 151
           TLLGDSVHAMQPNMGQGGCMAIE +    +E
Sbjct: 365 TLLGDSVHAMQPNMGQGGCMAIEDSYQLAME 395


>GSVIVT01001372001 assembled CDS
          Length = 475

 Score =  202 bits (515), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 115/152 (75%), Gaps = 1/152 (0%)

Query: 1   VRKNLFGPKDATYSDYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 60
           VR  LFG ++A YS+YTCY+G+ +FVP  I +VGYRVFLG  QYFV+SDVG GKMQWYAF
Sbjct: 225 VRSKLFGRQEAKYSNYTCYSGLTNFVPPYINTVGYRVFLGLNQYFVASDVGNGKMQWYAF 284

Query: 61  HKEPP-GGVDRPNGKKERLLKIFEGWCDNVIDLLLATDEDAILRRDIYDRTPTLTWGRGR 119
           ++EPP    D P GKK+RLL++F  WCD VI L+L T +  IL+RDIYDR    +WG GR
Sbjct: 285 NREPPMNNTDSPKGKKQRLLELFRSWCDEVITLILKTPDHMILQRDIYDRDMIYSWGTGR 344

Query: 120 VTLLGDSVHAMQPNMGQGGCMAIEVNPYFLLE 151
           VTL+GD+ H MQPN+GQGGCMAIE     +LE
Sbjct: 345 VTLVGDAAHPMQPNLGQGGCMAIEDCYQLILE 376


>GSVIVT01007345001 assembled CDS
          Length = 451

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 50  VGAGKMQWY-AFHKEPPG-GVDRPNGKKERLLKIFEGWCDNVIDLLLATDEDAILRRDIY 107
           V   K+ W+  F+   PG  +  P+  K++  ++   W   +++++  T +D I+R  + 
Sbjct: 267 VSPTKVYWFICFNSPSPGPKITDPSVLKKQARELVRNWPSELLNIIDLTPDDTIIRTPLV 326

Query: 108 DRT--PTLT--WGRGRVTLLGDSVHAMQPNMGQGGCMAIE 143
           DR   P ++     G V L+GD+ H M PN+GQG C A+E
Sbjct: 327 DRWLWPAISPPASSGGVVLVGDAWHPMTPNLGQGACCALE 366