Jatropha Genome Database

JcCB0537911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0537911.10 + phase: 0 /partial
         (166 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036983001 assembled CDS                                       283   4e-77
GSVIVT01036981001 assembled CDS                                       269   6e-73
GSVIVT01029761001 assembled CDS                                       244   1e-65
GSVIVT01008968001 assembled CDS                                       243   4e-65

>GSVIVT01036983001 assembled CDS
          Length = 397

 Score =  283 bits (723), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 134/166 (80%), Positives = 144/166 (86%)

Query: 1   VAIETASFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDFNRIVCTCFNGASNVVQAGGL 60
           VAIE +SFSKYAGFTGVRLGWTVVPKELL+SDGFPVAKDFNRIVCT FNGASN+ QAGGL
Sbjct: 232 VAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFPVAKDFNRIVCTTFNGASNISQAGGL 291

Query: 61  ACLSPEGRNAMQKVVGFYKENADIIMDTFNSLGFNVYGGVNAPYVWVHFPGRSSWDVFSE 120
           ACLSPEG  AM KVVGFY+EN +IIM+TF SLGF+VYGG NAPYVWVHFPG+SSWDVFSE
Sbjct: 292 ACLSPEGLEAMHKVVGFYQENTNIIMETFTSLGFSVYGGKNAPYVWVHFPGQSSWDVFSE 351

Query: 121 ILEKTHVVTTXXXXXXXXXXXXIRVSAFGHRENILEACRRFKQLYK 166
           ILEKTHVVTT            IRVSAFGHR N+LEAC+RFKQLYK
Sbjct: 352 ILEKTHVVTTPGSGFGPAGDGFIRVSAFGHRGNVLEACKRFKQLYK 397


>GSVIVT01036981001 assembled CDS
          Length = 469

 Score =  269 bits (687), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 128/166 (77%), Positives = 139/166 (83%)

Query: 1   VAIETASFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDFNRIVCTCFNGASNVVQAGGL 60
           VAIE +SFSKYAGFTGVRLGWTVVPKELL+SDGFPVAKDFNRI CT FN ASN+ QA GL
Sbjct: 304 VAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFPVAKDFNRIECTTFNAASNISQASGL 363

Query: 61  ACLSPEGRNAMQKVVGFYKENADIIMDTFNSLGFNVYGGVNAPYVWVHFPGRSSWDVFSE 120
           ACLSPEG  AM K+VGFYKEN +IIM+TF SLGF+VYGG NAPYVWVHFPG+SSWDVFSE
Sbjct: 364 ACLSPEGLEAMHKLVGFYKENTNIIMETFTSLGFSVYGGKNAPYVWVHFPGQSSWDVFSE 423

Query: 121 ILEKTHVVTTXXXXXXXXXXXXIRVSAFGHRENILEACRRFKQLYK 166
           ILEKTHVVTT            IRV AF HR N+LEAC+RFK+LYK
Sbjct: 424 ILEKTHVVTTPGSGFGPAGDGFIRVCAFSHRGNVLEACKRFKRLYK 469


>GSVIVT01029761001 assembled CDS
          Length = 440

 Score =  244 bits (624), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/164 (70%), Positives = 131/164 (79%)

Query: 1   VAIETASFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDFNRIVCTCFNGASNVVQAGGL 60
           VAIE +SFSK+AGFTGVRLGWTVVP ELLFS+GFPV KD+NRIVCTCFNGAS++ QAGGL
Sbjct: 275 VAIEISSFSKFAGFTGVRLGWTVVPDELLFSNGFPVIKDYNRIVCTCFNGASSIAQAGGL 334

Query: 61  ACLSPEGRNAMQKVVGFYKENADIIMDTFNSLGFNVYGGVNAPYVWVHFPGRSSWDVFSE 120
           ACLS +G  A+Q VV +YKENA I+ DTF SLG +VYGG+NAPY WVHFPG  SWDVF+E
Sbjct: 335 ACLSSDGLMAVQSVVDYYKENAKILGDTFTSLGLDVYGGINAPYAWVHFPGMKSWDVFTE 394

Query: 121 ILEKTHVVTTXXXXXXXXXXXXIRVSAFGHRENILEACRRFKQL 164
           +LEKTH++T             IRVSAFGHRE ILEA RR K L
Sbjct: 395 LLEKTHIITVPGCGFGPGGEEHIRVSAFGHRECILEASRRLKSL 438


>GSVIVT01008968001 assembled CDS
          Length = 463

 Score =  243 bits (619), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 113/166 (68%), Positives = 132/166 (79%)

Query: 1   VAIETASFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDFNRIVCTCFNGASNVVQAGGL 60
           VAIE +SFSK+AGFTGVRLGWTVVP+ELL+S+GFPV KD+NRIVCTCFNGAS++ QAGGL
Sbjct: 298 VAIEISSFSKFAGFTGVRLGWTVVPEELLYSNGFPVIKDYNRIVCTCFNGASSIAQAGGL 357

Query: 61  ACLSPEGRNAMQKVVGFYKENADIIMDTFNSLGFNVYGGVNAPYVWVHFPGRSSWDVFSE 120
           ACLS +G  AM  V+ +YKENA IIMDTF SLG  V+GG NAPY+WVHFPG  SWDVF+E
Sbjct: 358 ACLSSDGYLAMNAVLDYYKENAKIIMDTFTSLGLKVHGGKNAPYMWVHFPGLRSWDVFNE 417

Query: 121 ILEKTHVVTTXXXXXXXXXXXXIRVSAFGHRENILEACRRFKQLYK 166
           ILEKTH++T             IRVSAFG RE+++EA RR K L K
Sbjct: 418 ILEKTHIITVPGTGFGPGGEGYIRVSAFGQRESVIEASRRLKNLLK 463