Jatropha Genome Database
- JcCB0536531.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0536531.10 + phase: 2 /pseudo/partial
(59 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01022245001 assembled CDS 74 2e-14
GSVIVT01035426001 assembled CDS 73 3e-14
GSVIVT01033195001 assembled CDS 72 7e-14
GSVIVT01033194001 assembled CDS 65 9e-12
GSVIVT01021397001 assembled CDS 62 5e-11
GSVIVT01020864001 assembled CDS 58 8e-10
GSVIVT01028147001 assembled CDS 58 9e-10
GSVIVT01014854001 assembled CDS 57 2e-09
GSVIVT01037775001 assembled CDS 56 3e-09
GSVIVT01001332001 assembled CDS 56 3e-09
GSVIVT01011472001 assembled CDS 56 3e-09
GSVIVT01030046001 assembled CDS 56 4e-09
GSVIVT01012196001 assembled CDS 56 4e-09
GSVIVT01033063001 assembled CDS 55 6e-09
GSVIVT01022259001 assembled CDS 55 8e-09
GSVIVT01026969001 assembled CDS 55 8e-09
GSVIVT01007006001 assembled CDS 55 8e-09
GSVIVT01035965001 assembled CDS 55 1e-08
GSVIVT01034968001 assembled CDS 54 2e-08
GSVIVT01019109001 assembled CDS 54 2e-08
GSVIVT01010525001 assembled CDS 53 3e-08
GSVIVT01018300001 assembled CDS 53 4e-08
GSVIVT01024624001 assembled CDS 53 4e-08
GSVIVT01030258001 assembled CDS 51 9e-08
GSVIVT01012682001 assembled CDS 49 3e-07
GSVIVT01023600001 assembled CDS 49 4e-07
GSVIVT01008553001 assembled CDS 48 7e-07
GSVIVT01025562001 assembled CDS 48 7e-07
GSVIVT01028244001 assembled CDS 48 8e-07
GSVIVT01035884001 assembled CDS 48 9e-07
GSVIVT01030453001 assembled CDS 48 1e-06
GSVIVT01020060001 assembled CDS 48 1e-06
GSVIVT01008046001 assembled CDS 47 2e-06
GSVIVT01011356001 assembled CDS 47 2e-06
GSVIVT01029688001 assembled CDS 46 3e-06
GSVIVT01035885001 assembled CDS 46 4e-06
GSVIVT01037686001 assembled CDS 46 5e-06
GSVIVT01034148001 assembled CDS 45 5e-06
>GSVIVT01022245001 assembled CDS
Length = 193
Score = 73.6 bits (179), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/39 (82%), Positives = 36/39 (92%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
NYY+C++ GC VKKRVERD +DSSYVITTYEGVHNHESP
Sbjct: 127 NYYKCASGGCNVKKRVERDREDSSYVITTYEGVHNHESP 165
>GSVIVT01035426001 assembled CDS
Length = 166
Score = 72.8 bits (177), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 35/42 (83%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESPFTF 49
NYYRCS +GC VKKRVERD +D YVITTYEG+HNHESP F
Sbjct: 125 NYYRCSVDGCNVKKRVERDREDPKYVITTYEGIHNHESPSKF 166
>GSVIVT01033195001 assembled CDS
Length = 101
Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 35/39 (89%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
NYYRCS+ GC+VKKRVERD DSSYVITTYEGVHNH +P
Sbjct: 40 NYYRCSSRGCQVKKRVERDRDDSSYVITTYEGVHNHPTP 78
>GSVIVT01033194001 assembled CDS
Length = 156
Score = 64.7 bits (156), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 33/39 (84%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
NYYRCS+ C+VKKR+ERD +DSSYVITTY G+HNH P
Sbjct: 89 NYYRCSSGDCQVKKRIERDIEDSSYVITTYTGIHNHPIP 127
>GSVIVT01021397001 assembled CDS
Length = 319
Score = 62.4 bits (150), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESPFTFDKN 52
+YYRC+ + C VKKRVER +D S VITTYEG HNH+ P T N
Sbjct: 202 SYYRCTTQKCTVKKRVERSFQDPSTVITTYEGQHNHQIPVTLRGN 246
>GSVIVT01020864001 assembled CDS
Length = 311
Score = 58.2 bits (139), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/45 (60%), Positives = 31/45 (68%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESPFTFDKN 52
+YYRC+ + C VKKRVER +D S VITTYEG HNH P T N
Sbjct: 194 SYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHPCPATIRGN 238
>GSVIVT01028147001 assembled CDS
Length = 302
Score = 57.8 bits (138), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
+YYRC++ C VKKRVER KD + V+TTYEG H H SP
Sbjct: 170 SYYRCTSASCNVKKRVERCFKDPAIVVTTYEGQHTHPSP 208
>GSVIVT01014854001 assembled CDS
Length = 622
Score = 56.6 bits (135), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
+YY+C+N GC V+K VER D VITTYEG HNH+ P
Sbjct: 461 SYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVP 499
>GSVIVT01037775001 assembled CDS
Length = 552
Score = 56.2 bits (134), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
+YY+C+N GC V+K VER D VITTYEG HNH+ P
Sbjct: 389 SYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVP 427
>GSVIVT01001332001 assembled CDS
Length = 435
Score = 56.2 bits (134), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESPFTFDKNNN 54
+YY+C+N GC V+K VER D VITTYEG HNH+ P ++N
Sbjct: 381 SYYKCTNPGCNVRKHVERAATDPKAVITTYEGKHNHDVPAAKSSSHN 427
>GSVIVT01011472001 assembled CDS
Length = 889
Score = 56.2 bits (134), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESPFTFDKNNN 54
+YY+C++ GC V+K VER D VITTYEG HNH+ P + ++N
Sbjct: 796 SYYKCTSLGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHN 842
>GSVIVT01030046001 assembled CDS
Length = 364
Score = 55.8 bits (133), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 28/39 (71%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
+YYRCSN GC VKK VER D VITTYEG H+H+ P
Sbjct: 263 SYYRCSNAGCPVKKHVERASHDPKMVITTYEGQHDHDMP 301
>GSVIVT01012196001 assembled CDS
Length = 283
Score = 55.8 bits (133), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHES 45
+YYRC+N C VKKRVER +D S VITTYEG H H +
Sbjct: 161 SYYRCTNSKCTVKKRVERSSEDPSIVITTYEGQHCHHT 198
>GSVIVT01033063001 assembled CDS
Length = 182
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNH 43
+YYRC+++GC VKK+V+R KD S V+TTYEGVH H
Sbjct: 126 SYYRCTHQGCNVKKQVQRLSKDESIVVTTYEGVHTH 161
>GSVIVT01022259001 assembled CDS
Length = 226
Score = 54.7 bits (130), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESPFTFDKNNNKTTLD 59
+YYRC+ + CRVKKRVER +D VITTYEG H H +++ + L+
Sbjct: 171 SYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDLEESQAPSHLN 222
>GSVIVT01026969001 assembled CDS
Length = 201
Score = 54.7 bits (130), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/36 (61%), Positives = 30/36 (83%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNH 43
+YYRC++ C VKK+V+R KD+S V+TTYEG+HNH
Sbjct: 144 SYYRCTHHTCDVKKQVQRLSKDTSVVVTTYEGIHNH 179
>GSVIVT01007006001 assembled CDS
Length = 550
Score = 54.7 bits (130), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
+YY+C+N GC V+K VER D VITTYEG HNH+ P
Sbjct: 382 SYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVP 420
>GSVIVT01035965001 assembled CDS
Length = 530
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESPFTFDKNNNKT 56
+YYRC++ GC V+K VERD D + +I TYEG H+H+ P +++ +T
Sbjct: 370 SYYRCTSAGCPVRKHVERDTDDKTTIIVTYEGKHDHDRPVPKKRHSPRT 418
>GSVIVT01034968001 assembled CDS
Length = 309
Score = 53.5 bits (127), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
+YYRC+ C VKKRVER D + V+TTYEG H H P
Sbjct: 176 SYYRCTTAACGVKKRVERSSDDPTTVVTTYEGQHTHPCP 214
>GSVIVT01019109001 assembled CDS
Length = 486
Score = 53.5 bits (127), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
NYY+C++ GC V++ VER + +I TYEG HNHE P
Sbjct: 259 NYYKCTSTGCSVRRHVERASNNQKSIIATYEGKHNHEVP 297
>GSVIVT01010525001 assembled CDS
Length = 189
Score = 52.8 bits (125), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 31/37 (83%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHE 44
+YYRC+++GC VKK+V+R KD V+TTYEG+H+H+
Sbjct: 132 SYYRCTHQGCNVKKQVQRLSKDEGIVVTTYEGMHSHQ 168
>GSVIVT01018300001 assembled CDS
Length = 228
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNH 43
+YYRC++ CRVKKRVER +D VITTYEG HNH
Sbjct: 176 SYYRCTHTNCRVKKRVERLSEDCRMVITTYEGRHNH 211
>GSVIVT01024624001 assembled CDS
Length = 570
Score = 52.8 bits (125), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
+YY+C+N GC V+K VER D VITTYEG HNH+ P
Sbjct: 454 SYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVP 492
>GSVIVT01030258001 assembled CDS
Length = 513
Score = 51.2 bits (121), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
+YY+C++ GC V+K VER KD V+TTYEG HNH+ P
Sbjct: 375 SYYKCTSIGCPVRKHVERSSKDIRAVLTTYEGKHNHDVP 413
>GSVIVT01012682001 assembled CDS
Length = 510
Score = 49.3 bits (116), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 9 YYRCSNE-GCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
YYRC+ GC V+K+V+R +D S +ITTYEG HNH P
Sbjct: 298 YYRCTMAVGCPVRKQVQRCAEDRSILITTYEGTHNHPLP 336
>GSVIVT01023600001 assembled CDS
Length = 499
Score = 49.3 bits (116), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
NYYRC++ GC V+K +E ++S VI TY+G+H+H+ P
Sbjct: 382 NYYRCTSAGCPVRKHIETAIDNTSAVIITYKGIHDHDMP 420
>GSVIVT01008553001 assembled CDS
Length = 151
Score = 48.1 bits (113), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNH 43
+YYRC+ + C VKK+V+R KD V+TTYEG+H H
Sbjct: 93 SYYRCTYKDCNVKKQVQRLSKDEEIVVTTYEGIHTH 128
>GSVIVT01025562001 assembled CDS
Length = 438
Score = 48.1 bits (113), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNHESPFTFDKNNNKTT 57
+YYRC++ C V+K VER +D ITTYEG HNH+ P +N N T
Sbjct: 378 SYYRCTSLKCNVRKHVERASEDPGSFITTYEGKHNHDMPT---RNTNAAT 424
>GSVIVT01028244001 assembled CDS
Length = 479
Score = 48.1 bits (113), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 9 YYRCS-NEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
YYRC+ GC V+K+V+R +D + +ITTYEG HNH P
Sbjct: 257 YYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLP 295
>GSVIVT01035884001 assembled CDS
Length = 262
Score = 48.1 bits (113), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 9 YYRCS-NEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
Y+RCS C VKK+V+R +DSS ++ TYEG HNHE P
Sbjct: 119 YFRCSMAPQCPVKKKVQRCMEDSSILVATYEGAHNHEPP 157
>GSVIVT01030453001 assembled CDS
Length = 498
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 9 YYRCS-NEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
YYRC+ GC V+K+V+R +D S +ITTYEG HNH P
Sbjct: 332 YYRCTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHPLP 370
>GSVIVT01020060001 assembled CDS
Length = 594
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 9 YYRCS-NEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
YYRC+ + C V+K+V+R +D+S +ITTYEG HNH P
Sbjct: 267 YYRCTVSPSCPVRKQVQRCAEDTSILITTYEGTHNHPLP 305
>GSVIVT01008046001 assembled CDS
Length = 605
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 9 YYRCS-NEGCRVKKRVERDGKDSSYVITTYEGVHNHESPF 47
YYRC+ C V+K+V+R +D S +ITTYEG HNH P+
Sbjct: 280 YYRCTVAPSCPVRKQVQRFAEDMSILITTYEGTHNHPLPY 319
>GSVIVT01011356001 assembled CDS
Length = 502
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 9 YYRCS-NEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
YYRC+ C V+K+V+R +D S +ITTYEG HNH P
Sbjct: 194 YYRCTVAPSCPVRKQVQRCAEDMSILITTYEGTHNHPLP 232
>GSVIVT01029688001 assembled CDS
Length = 490
Score = 46.2 bits (108), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 9 YYRCS-NEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
YYRC+ GC V+K+V+R +D S +ITTYEG HNH P
Sbjct: 254 YYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLP 292
>GSVIVT01035885001 assembled CDS
Length = 286
Score = 45.8 bits (107), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 9 YYRCS-NEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
Y++CS C VKK+V+R +D S +I TYEG HNH+ P
Sbjct: 182 YFKCSFAPTCPVKKKVQRSAEDQSLLIATYEGEHNHQQP 220
>GSVIVT01037686001 assembled CDS
Length = 496
Score = 45.8 bits (107), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 9 YYRCS-NEGCRVKKRVERDGKDSSYVITTYEGVHNHESP 46
YYRC+ C V+K+V+R +D + +ITTYEG HNH P
Sbjct: 266 YYRCTMATACPVRKQVQRSAEDRTVLITTYEGHHNHPLP 304
>GSVIVT01034148001 assembled CDS
Length = 299
Score = 45.4 bits (106), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 8 NYYRCSNEGCRVKKRVERDGKDSSYVITTYEGVHNH 43
+YYRC+N C KK+VE+ +D +I TYEG+H H
Sbjct: 133 SYYRCTNPRCSAKKQVEKSSEDPDTLIITYEGLHLH 168