Jatropha Genome Database

JcCB0536281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0536281.10 + phase: 2 /partial
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035857001 assembled CDS                                       162   6e-41
GSVIVT01015552001 assembled CDS                                       142   4e-35
GSVIVT01011757001 assembled CDS                                        94   2e-20
GSVIVT01020143001 assembled CDS                                        91   2e-19
GSVIVT01018122001 assembled CDS                                        87   5e-18
GSVIVT01036233001 assembled CDS                                        79   1e-15
GSVIVT01010301001 assembled CDS                                        62   1e-10
GSVIVT01003969001 assembled CDS                                        61   2e-10

>GSVIVT01035857001 assembled CDS
          Length = 439

 Score =  162 bits (410), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 91/153 (59%), Positives = 102/153 (66%), Gaps = 29/153 (18%)

Query: 3   AQLHQIHRLKQTFKSISFNERQVQASKQSGKSDVASS-------EG-----------LIS 44
             L  I R KQT KS SF+++Q   SKQS  S+ ASS       EG           L +
Sbjct: 153 GSLASISRPKQTLKSRSFSDKQDHLSKQSKNSEAASSTSNMIQPEGRAEKTRLKPVKLGA 212

Query: 45  PT-----------AEDSKPRRVGALPNYGFSFKCDERAEKRREFYSKLEEKIHAKEVEKN 93
           PT            ED+KPRRV ALP+Y FSF+CDERAEKRREFY+KLEEK HAKE+E+ 
Sbjct: 213 PTVSDVNTKSPSPTEDTKPRRVAALPSYNFSFRCDERAEKRREFYTKLEEKTHAKEIERT 272

Query: 94  TLQAKSKETQEAEIKMLRKSLNFKATPMPSFYQ 126
            LQAKSKETQEAEIKMLRKSL FKATPMPSFYQ
Sbjct: 273 NLQAKSKETQEAEIKMLRKSLTFKATPMPSFYQ 305


>GSVIVT01015552001 assembled CDS
          Length = 424

 Score =  142 bits (359), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 72/83 (86%)

Query: 43  ISPTAEDSKPRRVGALPNYGFSFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKET 102
           +SP   D+KP+R G LP YGFSFKCDERAEKR+EFY KLEEK HAKEVE+   QAKSKET
Sbjct: 191 LSPEEGDAKPQRTGHLPAYGFSFKCDERAEKRKEFYLKLEEKTHAKEVERTNRQAKSKET 250

Query: 103 QEAEIKMLRKSLNFKATPMPSFY 125
           QEAEIKMLRKSLNFKATPMPSFY
Sbjct: 251 QEAEIKMLRKSLNFKATPMPSFY 273


>GSVIVT01011757001 assembled CDS
          Length = 593

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 54/64 (84%)

Query: 63  FSFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAEIKMLRKSLNFKATPMP 122
           F+F+ DERAE+R+EF+ KLE+K+HAKE E N +QAK++E  EAEI+  R+SLNFKATPMP
Sbjct: 377 FNFRSDERAERRKEFFMKLEKKMHAKEAEMNQIQAKTQEKTEAEIRQFRRSLNFKATPMP 436

Query: 123 SFYQ 126
           SFY 
Sbjct: 437 SFYH 440


>GSVIVT01020143001 assembled CDS
          Length = 513

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 52/64 (81%)

Query: 63  FSFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAEIKMLRKSLNFKATPMP 122
           F  + +ERAEKR+EF+ KLEEK +AK+ EK  LQ+KSKE +E EIK LR+SLNFKATPMP
Sbjct: 429 FGLRSNERAEKRKEFFKKLEEKSNAKQTEKTRLQSKSKEQKEVEIKKLRQSLNFKATPMP 488

Query: 123 SFYQ 126
            FYQ
Sbjct: 489 GFYQ 492


>GSVIVT01018122001 assembled CDS
          Length = 450

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 61/98 (62%), Gaps = 3/98 (3%)

Query: 29  KQSGKSDVASSEGLISPTAEDSKPRRVGALPNYGFSFKCDERAEKRREFYSKLEEKIHAK 88
           K   + D  S     +P+A   K R + A       F+C  RAEKR+EFYSKLEEK  A 
Sbjct: 242 KHPDEEDSCSVTSSTAPSARTVKSRAIVA---SAPVFRCTARAEKRKEFYSKLEEKHQAL 298

Query: 89  EVEKNTLQAKSKETQEAEIKMLRKSLNFKATPMPSFYQ 126
           E EKN  +A++KE +EA IK LRKSL FKA+PMPSFY 
Sbjct: 299 EAEKNQCEARTKEEREAAIKQLRKSLMFKASPMPSFYH 336


>GSVIVT01036233001 assembled CDS
          Length = 445

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%), Gaps = 4/71 (5%)

Query: 55  VGALPNYGFSFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAEIKMLRKSL 114
           VG  P    +F+C ERAEKR+EFYSKLEEK  A  +E++  +A+ KE QEA I+ LR+++
Sbjct: 267 VGTAP----TFRCTERAEKRKEFYSKLEEKHQALVLERSQCEARHKEEQEAAIRQLRRNM 322

Query: 115 NFKATPMPSFY 125
            FKA P+PSFY
Sbjct: 323 VFKANPVPSFY 333


>GSVIVT01010301001 assembled CDS
          Length = 621

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 63  FSFKCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAEIKMLRKSLNFKATP 120
           F F+ +ER  KR+EF+ KLEEK +AKE EK  LQ KSKE  E ++K LR+S+ FKA P
Sbjct: 384 FRFRSEERVAKRKEFFQKLEEK-NAKEAEKMQLQTKSKEKPETDLKKLRRSITFKAIP 440


>GSVIVT01003969001 assembled CDS
          Length = 567

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 6/70 (8%)

Query: 59  PNYGFSF--KCDERAEKRREFYSKLEEKIHAKEVEKNTLQAKSKETQEAEIKMLRKSLNF 116
           PN+  SF  + +ERA +R+    KLEE+ +AKE EK  LQ K KE  E+E++ LR++L F
Sbjct: 404 PNFSTSFNLRTEERAARRK----KLEERFNAKETEKVQLQTKIKEKAESELRKLRQTLCF 459

Query: 117 KATPMPSFYQ 126
           KA P+P FY+
Sbjct: 460 KARPLPDFYK 469