Jatropha Genome Database

JcCB0535351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0535351.10 - phase: 1 /pseudo/partial
         (209 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033317001 assembled CDS                                       251   1e-67
GSVIVT01025266001 assembled CDS                                       250   3e-67
GSVIVT01032092001 assembled CDS                                       237   3e-63
GSVIVT01032091001 assembled CDS                                       203   6e-53
GSVIVT01030279001 assembled CDS                                       152   1e-37
GSVIVT01023938001 assembled CDS                                       141   2e-34
GSVIVT01010278001 assembled CDS                                        48   4e-06

>GSVIVT01033317001 assembled CDS
          Length = 507

 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 150/192 (78%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           +G LLL+RVIAVTFCVTL+ASLAAR GST+MAAFQVCLQ+WLATSLLADGLAVAGQAILA
Sbjct: 303 NGSLLLVRVIAVTFCVTLAASLAARLGSTSMAAFQVCLQIWLATSLLADGLAVAGQAILA 362

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
           +AFAK DY+KATATASRV                    + SR+FT DVNVL+++++GIPF
Sbjct: 363 SAFAKKDYDKATATASRVLQLGLVLGLVLSVFLLVVLQYASRVFTKDVNVLQLMNLGIPF 422

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           VA TQPINALAFVFDGVNFGASDFAYSA SMVLVA            +  FIGIW+AL+I
Sbjct: 423 VAVTQPINALAFVFDGVNFGASDFAYSACSMVLVAIVSILCLFILSSSLGFIGIWIALSI 482

Query: 198 YMSLRTSAGFWR 209
           YMSLRT +GFWR
Sbjct: 483 YMSLRTMSGFWR 494


>GSVIVT01025266001 assembled CDS
          Length = 513

 Score =  250 bits (639), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 147/192 (76%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           +G LLLMRVIAVTFCVTL+ASLAARQG T+MAAFQVCLQVWLATSLLADGLAVAGQAILA
Sbjct: 309 NGLLLLMRVIAVTFCVTLAASLAARQGPTSMAAFQVCLQVWLATSLLADGLAVAGQAILA 368

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
           +AFAK DY KATA ASRV                      ++LFT D++VL +ISIGIPF
Sbjct: 369 SAFAKQDYSKATAAASRVLQLGLVLGLVLSSILGTGMQSAAKLFTKDLSVLHLISIGIPF 428

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           VA TQPIN+LAFVFDGVNFGASDFAYSAYSMVLVA            ++ F+GIWVALTI
Sbjct: 429 VAVTQPINSLAFVFDGVNFGASDFAYSAYSMVLVAIVSILCLFILSSSFGFVGIWVALTI 488

Query: 198 YMSLRTSAGFWR 209
           Y++LR  AGFWR
Sbjct: 489 YVTLRAFAGFWR 500


>GSVIVT01032092001 assembled CDS
          Length = 536

 Score =  237 bits (604), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 139/192 (72%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           +GFLLL RVIAVTFCVTL+ASLAAR GS  MAAFQ+CLQVWL +SLLADGLAVAGQAILA
Sbjct: 327 NGFLLLWRVIAVTFCVTLAASLAARLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILA 386

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
            AFA+ DY KATA A+RV                    FG+ +FT D NVL++ISI IPF
Sbjct: 387 CAFAEKDYGKATAAATRVLQMTFVLGLGLALLVGVGLKFGAGVFTRDPNVLQLISISIPF 446

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           +A TQPIN LAFVFDGVNFGASDFAY+AYSM+LV+            T  F+GIWVALTI
Sbjct: 447 IAATQPINCLAFVFDGVNFGASDFAYTAYSMILVSILSIASLFYLSKTNGFVGIWVALTI 506

Query: 198 YMSLRTSAGFWR 209
           YM LR  AG WR
Sbjct: 507 YMVLRILAGIWR 518


>GSVIVT01032091001 assembled CDS
          Length = 542

 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/151 (68%), Positives = 118/151 (78%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           +G LLL RVIA TFCVTL+ASLAAR GST MAAFQ+CLQVW+ +SLLADGLAVAGQAILA
Sbjct: 339 NGVLLLGRVIAATFCVTLAASLAARLGSTPMAAFQICLQVWMTSSLLADGLAVAGQAILA 398

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
            AFA++DY KAT  A+RV                    FG+++F+ DVNVL +ISIG+PF
Sbjct: 399 CAFAENDYAKATNAATRVLQMGFILGLGLALLVGLGLQFGAKVFSKDVNVLHLISIGVPF 458

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSM 168
           VA TQPIN+LAFVFDGVNFGASDFAYSAYSM
Sbjct: 459 VAATQPINSLAFVFDGVNFGASDFAYSAYSM 489


>GSVIVT01030279001 assembled CDS
          Length = 558

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 114/192 (59%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           SG LL+ R +AV   +TL+ S+AA++G   MA  Q+CLQVWLA SLL D LA++GQA+LA
Sbjct: 345 SGGLLIGRTLAVLATMTLATSMAAKEGPIPMAGHQICLQVWLAISLLTDALALSGQALLA 404

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
           + +++ +YE+A     +V                      + LFT+D+ VL +   GI F
Sbjct: 405 SGYSQGNYEEAQQVIYKVLEMGLATGIALAVILFLGFGAFASLFTTDLEVLGIAWSGILF 464

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           VAG+QP+NA+AFV DG+ +G SDF Y+AYSMVLVA                 G+W  L +
Sbjct: 465 VAGSQPMNAIAFVIDGLYYGVSDFGYAAYSMVLVALISSVFLLLAAPVCGLAGVWTGLFL 524

Query: 198 YMSLRTSAGFWR 209
           +M+LR  AG WR
Sbjct: 525 FMTLRVVAGIWR 536


>GSVIVT01023938001 assembled CDS
          Length = 604

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 108/192 (56%)

Query: 18  SGFLLLMRVIAVTFCVTLSASLAARQGSTAMAAFQVCLQVWLATSLLADGLAVAGQAILA 77
           SG  LL R +AV   +TL+ S+AARQG  AMA  Q+CLQVWLA SLL D LA + QA++A
Sbjct: 385 SGGFLLGRTLAVLATMTLATSVAARQGPIAMAGHQICLQVWLAVSLLTDALAASAQAMIA 444

Query: 78  TAFAKSDYEKATATASRVXXXXXXXXXXXXXXXXXXXSFGSRLFTSDVNVLRMISIGIPF 137
           ++ +K DY+        V                      + +FT D+ VL ++  G+ F
Sbjct: 445 SSLSKGDYKAVKEITYFVLKTGLFTGIFLAVALSAFYGSLATIFTKDIEVLGIVRTGVLF 504

Query: 138 VAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVALTI 197
           V  +QPIN+LAF+FDG++FGASDF Y+A SM+++                  G+W+ LT+
Sbjct: 505 VCASQPINSLAFIFDGLHFGASDFPYAARSMMVIGAICSAFLLYVPSLLGLQGVWLGLTL 564

Query: 198 YMSLRTSAGFWR 209
           +M LR  AG  R
Sbjct: 565 FMGLRMVAGVIR 576


>GSVIVT01010278001 assembled CDS
          Length = 106

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 135 IPFVAGTQPINALAFVFDGVNFGASDFAYSAYSMVLVAXXXXXXXXXXXXTYKFIGIWVA 194
           +PF    QP N+LA +F  +++GASDF+Y+A SM++                   G+W+ 
Sbjct: 23  LPFFYAIQPRNSLALIFYSLHYGASDFSYAARSMMVAGAICSAFLLYVPSLLGLHGVWLG 82

Query: 195 LTIY 198
           LT+Y
Sbjct: 83  LTLY 86