Jatropha Genome Database

JcCB0534601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0534601.10 - phase: 0 /partial
         (203 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015663001 assembled CDS                                       339   5e-94
GSVIVT01036111001 assembled CDS                                        62   2e-10

>GSVIVT01015663001 assembled CDS
          Length = 413

 Score =  339 bits (869), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 157/194 (80%), Positives = 171/194 (88%)

Query: 10  AFRFGADKESLREPRVVRVGLIQNSIALPTTASFVDQKRAIFQKLKPMIDAAGSSGVNIL 69
           A+ F ADKE LRE R+VRVGLIQNSIA PTTA F+DQ+ AIF+KLKP+IDAAG+SGV+IL
Sbjct: 79  AYCFHADKEQLRESRIVRVGLIQNSIASPTTAPFLDQRGAIFEKLKPIIDAAGASGVHIL 138

Query: 70  CLQEAWMMPFAFCTREKRWCEFAEPIDGESTQFLQEFAQKYNMVIISPILERDDNHGETL 129
           CLQEAW MPFAFCTREKRW EFAEP+DGESTQFLQ+ AQKYNMVI+SPILERD  HGET+
Sbjct: 139 CLQEAWTMPFAFCTREKRWSEFAEPVDGESTQFLQDLAQKYNMVIVSPILERDVKHGETI 198

Query: 130 WNTAXXXXXXXXXXXKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIAVNICYGRH 189
           WNTA           KHRKNHIPRVGDFNESTYYMEGNTGHPVFETA+GKIA+NICYGRH
Sbjct: 199 WNTAVIIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAINICYGRH 258

Query: 190 HPLNWLAFGLNGAE 203
           HPLNWLAFGLNGAE
Sbjct: 259 HPLNWLAFGLNGAE 272


>GSVIVT01036111001 assembled CDS
          Length = 297

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 57  MIDAAGSSGVNILCLQEAWMMPFAFCTREKR-WCEFAEPIDGESTQF-LQEFAQKYNMVI 114
           ++  A   G NI+ +QE +   + FC  ++  + + A+P  G  T   +Q+ A++  +VI
Sbjct: 30  LVRDAHRKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKGHPTILRMQKLAKELGVVI 88

Query: 115 ISPILERDDNHGETLWNTAXXXXXXXXXXXKHRKNHIPRVGDFNESTYYMEGNTGHPVFE 174
                E  +N     +N+             +RK+HIP    + E  Y+  G+TG  VFE
Sbjct: 89  PVSFFEEANN---AHYNSIAIVDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFE 145

Query: 175 TAYGKIAVNICYGRHHPLNWLAFGLNGAE 203
           T + KI V IC+ +  P    A  L GAE
Sbjct: 146 TKFAKIGVAICWDQWFPEAARAMVLQGAE 174