Jatropha Genome Database

JcCB0533111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0533111.10 + phase: 0 /partial
         (106 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033319001 assembled CDS                                        85   7e-18

>GSVIVT01033319001 assembled CDS
          Length = 1112

 Score = 85.1 bits (209), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 65/98 (66%), Gaps = 4/98 (4%)

Query: 13  KDGFELPSRLSVSAADCILAITEALTKKNKVSS---NNPKLLNSDALHRPISLVPAVSRE 69
           +DGF+LP+RLSV+AADCIL +T+ALT K  ++       K  NSD  + P +LVPA   E
Sbjct: 186 QDGFQLPTRLSVAAADCILDLTKALTIKTSITDVSSRRSKSSNSDVSNLPTTLVPAAVGE 245

Query: 70  KKAKPAHKSSEEST-FDMAYLLWDLIGELITLTQRLLA 106
           KK KP  KS+E S   +M  LLWD I +LI L QRLLA
Sbjct: 246 KKVKPTSKSAEFSNKLEMELLLWDHIDKLIILVQRLLA 283