Jatropha Genome Database

JcCB0528831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0528831.10 - phase: 1 /partial
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030280001 assembled CDS                                       164   4e-41

>GSVIVT01030280001 assembled CDS
          Length = 1134

 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/227 (47%), Positives = 130/227 (57%), Gaps = 19/227 (8%)

Query: 3   QDSDNVCGFTNSLFSTGSGKSVNISSAGLVRAKTLLGLENNNVSNFQGFQHPRKSPKVNE 62
            D DN CGF+NSLF TGSGK VNISSAGLVRAKTLLGLE N  SN    Q       + +
Sbjct: 154 HDRDNGCGFSNSLFQTGSGKMVNISSAGLVRAKTLLGLEEN--SNHHSCQE-----HITK 206

Query: 63  QNEWQDLSYLRMKEDMDNSGMQSVSTPSLIGSKLSNAVTPNLLQSELHNSTPKPPPIKFH 122
           Q+    L   R             ST +   ++  N   P+L QSE++N  P PPPIKFH
Sbjct: 207 QSVMDGLDVPR-----------PFSTSTSWRTESINEAVPHLKQSEMYNPAPNPPPIKFH 255

Query: 123 TAGGRSLSVSSDALERAKSLLGDPDLGTFLNEDDAVDPAHTVSKVCRLSDASVMREANFH 182
           TAGGRS+SVSSDAL+RA+SLLGDP+LGT LNE D  D   +  K     DAS  +E +  
Sbjct: 256 TAGGRSISVSSDALQRARSLLGDPELGTSLNEGDEDDMISSFLK-GSFRDASSDKENDSD 314

Query: 183 SAFTYPCAAKSKHIGKSFVXXXXXXXXXXXXXXXXENIISGISLIKK 229
           ++ ++   AKSKH  KSF+                EN  SG +LIKK
Sbjct: 315 TSLSHHEKAKSKHTSKSFISPIRLFPNRVQSSVMPENTYSGSNLIKK 361