Jatropha Genome Database

JcCB0523501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0523501.10 - phase: 0 /partial
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036171001 assembled CDS                                       302   1e-82
GSVIVT01036173001 assembled CDS                                       267   4e-72
GSVIVT01033433001 assembled CDS                                       164   3e-41
GSVIVT01013560001 assembled CDS                                       109   1e-24
GSVIVT01013562001 assembled CDS                                       100   6e-22
GSVIVT01013561001 assembled CDS                                        57   8e-09
GSVIVT01030325001 assembled CDS                                        56   1e-08

>GSVIVT01036171001 assembled CDS
          Length = 490

 Score =  302 bits (773), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 141/249 (56%), Positives = 186/249 (74%), Gaps = 1/249 (0%)

Query: 1   MGEMIVGHLKENLPMVIVRPTMVTSTWREPFPGWIEGVRTIDALIVGYGSGKMSFFVADL 60
           MGEM++GHLKENLP+ I+RPT+V+ST++EPFPGW+EG+RTID+  VGYG G+++FF+ D+
Sbjct: 243 MGEMLLGHLKENLPLAILRPTIVSSTYKEPFPGWVEGIRTIDSFAVGYGKGRLTFFLGDI 302

Query: 61  TXXXXXXXXXXXXNTIIAAMIVHANNQPCQVVYHIGSSIGNPIRYSNFRDYLYFYFTSKP 120
                        N++I AM  HAN QPC+V+Y +GSS+ NP+RYSN +D+   YFT  P
Sbjct: 303 EAIVDVIPADMVVNSMIVAMAAHAN-QPCEVIYQVGSSVKNPVRYSNLQDFGLRYFTKNP 361

Query: 121 WILQNGKPVKVAKPTILTTMANFHRYIAIRYLPLLKVLKLANTISCDYFQGTYNNLNRKI 180
           WI ++GK VKV K T+L+TM +FHRY+A+RYL LLK L+  NT  C YF+GTY +LNR+I
Sbjct: 362 WINKDGKAVKVGKVTVLSTMDSFHRYMALRYLLLLKGLQFVNTAFCQYFRGTYTDLNRRI 421

Query: 181 KRVTRLVELYQPYLFFHGIFDDSNTNKLLGIAKDNGTETNNFFFDVKSIDWDDYFINTHI 240
           K + RL+ELY+PYLFF G+FDD NT KL      +G E + F+FD K IDW+DYF+N HI
Sbjct: 422 KFLLRLIELYKPYLFFKGVFDDMNTEKLRMAVTASGAEADLFYFDPKCIDWEDYFMNIHI 481

Query: 241 PSIVKYVLK 249
           P  VKYV K
Sbjct: 482 PGAVKYVFK 490


>GSVIVT01036173001 assembled CDS
          Length = 490

 Score =  267 bits (682), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 123/249 (49%), Positives = 171/249 (68%), Gaps = 1/249 (0%)

Query: 1   MGEMIVGHLKENLPMVIVRPTMVTSTWREPFPGWIEGVRTIDALIVGYGSGKMSFFVADL 60
           MGEM++G  KENLP+VI+RPT++TST+ EPF GWIEG+RTID ++ GY  GK++  +AD 
Sbjct: 243 MGEMLLGQFKENLPLVILRPTIITSTYMEPFSGWIEGIRTIDNVLAGYCKGKLTCLLADP 302

Query: 61  TXXXXXXXXXXXXNTIIAAMIVHANNQPCQVVYHIGSSIGNPIRYSNFRDYLYFYFTSKP 120
                        N +I AM+ HAN QPC+++Y +GSS+ NP++  +  D+ + YF   P
Sbjct: 303 ECILDAIPGDMVVNCMIVAMVAHAN-QPCEIIYQVGSSLKNPLKLLDLHDFFFKYFHENP 361

Query: 121 WILQNGKPVKVAKPTILTTMANFHRYIAIRYLPLLKVLKLANTISCDYFQGTYNNLNRKI 180
           WI ++GK VKV+K  + +T   FH Y+A+RY+  LKVL+  N + C    G   + NRKI
Sbjct: 362 WINKDGKAVKVSKLILFSTTFVFHGYLAVRYMLPLKVLQFLNFLLCQILCGMCTDHNRKI 421

Query: 181 KRVTRLVELYQPYLFFHGIFDDSNTNKLLGIAKDNGTETNNFFFDVKSIDWDDYFINTHI 240
           K +  LVELY+PYLFF GIFDD NT+KL   A ++ ++ + F+FD K IDW+DYFIN HI
Sbjct: 422 KMLMYLVELYKPYLFFKGIFDDLNTDKLRLAATESSSKADLFYFDPKCIDWEDYFINIHI 481

Query: 241 PSIVKYVLK 249
           P ++KYVLK
Sbjct: 482 PGVLKYVLK 490


>GSVIVT01033433001 assembled CDS
          Length = 632

 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 136/250 (54%), Gaps = 8/250 (3%)

Query: 1   MGEMIVGHLKENLPMVIVRPTMVTSTWREPFPGWIEGVRTIDALIVGYGSGKMSFFVADL 60
           MGEM++  ++  +P+VI+RP+++ ST REPFPGW+EG R +D +++ YG G+++ FVAD 
Sbjct: 388 MGEMVIDQMRGEIPVVIIRPSVIESTCREPFPGWMEGNRMMDPIVLYYGKGQLTGFVADP 447

Query: 61  TXXXXXXXXXXXXNTIIAAMIVHANNQPCQV-VYHIGSSIGNPIRYSNFRDYLYFYFTSK 119
                        N  +AAM  H  +   +  +Y I SS+ NP+ + +   + Y +F S 
Sbjct: 448 NGVLDVVPADMVVNATLAAMARHGGSGKAETNIYQIASSVVNPLIFQDLTSHFYEHFKSS 507

Query: 120 PWILQNGKPVKVAKPTILTTMANFHRYIAIRYLPLLKVLKLANTISCDYFQGTYNNLNRK 179
           P +   G P+ V    + +++ +F  ++         +L+   +            L + 
Sbjct: 508 PCLDNKGNPIHVPIMKLFSSIEDFSSHLWRD-----AILRSGLSAMPSQTGKLLRKLEKT 562

Query: 180 IKRVTRLVELYQPYLFFHGIFDDSNTNKLLGIAKDNGTETNNFFFDVKSIDWDDYFINTH 239
           +K+   L ++YQPY F+ G FD+SNT +L+    +   E + F FDV SIDW DY  N H
Sbjct: 563 VKQAKYLADIYQPYTFYGGRFDNSNTQRLMDCMCEE--EKSKFGFDVGSIDWKDYISNVH 620

Query: 240 IPSIVKYVLK 249
           IP + ++V+K
Sbjct: 621 IPGLRRHVMK 630


>GSVIVT01013560001 assembled CDS
          Length = 571

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 36/243 (14%)

Query: 1   MGEMIVGHLKENLPMVIVRPTMVTSTWREPFPGWIEGVR--------------------- 39
           MGEM++  ++ ++P+VI+RPT + ST  +PFPGWI+G R                     
Sbjct: 333 MGEMMINSMRGDIPLVIIRPTAIESTLEDPFPGWIQGNRYLISLPFSCPCTKSHIFSYNQ 392

Query: 40  TIDALIVGYGSGKMSFFVADLTXXXXXXXXXXXXNTIIAAMIVHA-NNQPCQVVYHIGSS 98
            +D +I+ YG G +  F+ +              N IIAAM  H    +P   VYH+GSS
Sbjct: 393 MLDPMILSYGKGNLPSFLVNPEVVIDMIPVDMVVNAIIAAMAKHGIAGKPGIKVYHVGSS 452

Query: 99  IGNPIRYSNFRDYLYFYFTSKPWILQ-NGKPVKVAKPTILTTMANFHRYIAIRYLPLLKV 157
             N +   +   Y Y +F   P  +   GK   + +    ++M +F  ++    +   ++
Sbjct: 453 AVNLLPLGDLFKYSYEHFICSPINMDTEGKTTDMKEMKFFSSMDDFSSHMQTEIVQQRRL 512

Query: 158 LKLANTISCDYFQGTYNNLNRKIKRVTR----LVELYQPYLFFHGIFDDSNTNKLL-GIA 212
               N  S          L RK K +      L  +YQP++FF G FD+SNT+K++ G++
Sbjct: 513 AISGNNAS--------QRLERKCKMIVEHAINLARVYQPHMFFRGRFDNSNTHKIMEGMS 564

Query: 213 KDN 215
           ++ 
Sbjct: 565 EEE 567


>GSVIVT01013562001 assembled CDS
          Length = 212

 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 18/215 (8%)

Query: 42  DALIVGYGSGKMSFFVADLTXXXXXXXXXXXXNTIIAAMIVHA-NNQPCQVVYHIGSSIG 100
           D LI+ YG   +  F+ +              N IIAAM  H    +P   VYH+GSS  
Sbjct: 3   DPLILSYGRVNLPSFLVNPEAVIDMIPVVMVVNAIIAAMAKHGIAGKPGIKVYHVGSSAV 62

Query: 101 NPIRYSNFRDYLYFYFTSKPWILQ-NGKPVKVAKPTILTTMANFHRYIAIRYLPLLKVLK 159
           NP+   +   + Y +F   P  +   GK V + +  I + M +F  ++    +   ++  
Sbjct: 63  NPLPLGDLFKHSYEHFICSPINMDTEGKTVDMKEMKIFSPMDDFSSHMQTEIVQQRRLTI 122

Query: 160 LANTISCDYFQGTYNNLNRKIKRVTR----LVELYQPYLFFHGIFDDSNTNKLL-GIAKD 214
             N  S          L RK K +      L  +YQPY+FF G FD+SNT+ L+ G++++
Sbjct: 123 SGNKAS--------QRLERKCKMIVEHAINLARVYQPYMFFRGRFDNSNTHNLMEGMSEE 174

Query: 215 NGTETNNFFFDVKSIDWDDYFINTHIPSIVKYVLK 249
              E   F  DV+++DW+DY  N HI  + K+V+K
Sbjct: 175 ---EMKRFRLDVENVDWEDYITNIHISGLKKHVMK 206


>GSVIVT01013561001 assembled CDS
          Length = 311

 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query: 1   MGEMIVGHLKENLPMVIVRPTMVTSTWREPFPGWIEGVRTIDALIVGYGSGKMSFF 56
           MGEM++  ++ ++P+VI+RPT + ST  +PFPGWI+G R + +L       K  FF
Sbjct: 248 MGEMLINSMRGDIPLVIIRPTAIGSTLDDPFPGWIQGNRYLISLPFSCPCTKSHFF 303


>GSVIVT01030325001 assembled CDS
          Length = 157

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 32/39 (82%)

Query: 1   MGEMIVGHLKENLPMVIVRPTMVTSTWREPFPGWIEGVR 39
           MGEM++ +++  +P+VI+RP+ + ST REPFPGW+EG R
Sbjct: 101 MGEMLINNMRGEIPVVIIRPSFIESTCREPFPGWMEGNR 139