Jatropha Genome Database

JcCB0517161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0517161.20 + phase: 0 /partial
         (217 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008474001 assembled CDS                                       233   4e-62
GSVIVT01017111001 assembled CDS                                        60   7e-10
GSVIVT01008078001 assembled CDS                                        58   4e-09
GSVIVT01026360001 assembled CDS                                        52   2e-07
GSVIVT01033259001 assembled CDS                                        50   8e-07
GSVIVT01008016001 assembled CDS                                        47   5e-06

>GSVIVT01008474001 assembled CDS
          Length = 381

 Score =  233 bits (595), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/174 (66%), Positives = 130/174 (74%), Gaps = 12/174 (6%)

Query: 44  TVDLISDVFRSIPRFFFQSTRSIGRQNTTRHRSPLKQRNLKQESCKYRDKVLVLGPAAYR 103
           T D +S+V RSIPR FFQS RSIGRQ   RHRSPLKQRNL QE  K+           YR
Sbjct: 41  TTDSVSEVLRSIPRLFFQSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHR---------YR 91

Query: 104 DHKRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRREN 163
           D  +V +G+ KAMEF+ W+ET F F+H EMTCREM CVLARGNRL  LW+FL +M R+  
Sbjct: 92  DPHKVKLGVEKAMEFYSWVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARK-G 150

Query: 164 GVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
           G GV  VTT TITCL+KVLGEEGL NQALA FYRMKQ+HCKPDVYAYNTII AL
Sbjct: 151 GNGV--VTTATITCLMKVLGEEGLANQALAAFYRMKQFHCKPDVYAYNTIIYAL 202


>GSVIVT01017111001 assembled CDS
          Length = 638

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 103 RDHKRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRE 162
           R+  +++V ++  ++FF W     +F H   T   +   L     L ++W+ +++M R  
Sbjct: 95  REVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRST 154

Query: 163 NGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTII 214
             +G        ++ ++KVLG+  +VN+AL++FY++K   CKP    YN++I
Sbjct: 155 CVIG-----PADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMI 201


>GSVIVT01008078001 assembled CDS
          Length = 793

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 115 AMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTNT 174
           A+ FFYWL+    F H   T   M  +L R  +   + + L +M R  +G    +VT N 
Sbjct: 371 ALGFFYWLKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVR--DGCQPNVVTYNR 428

Query: 175 ITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIIN 215
              LI   G    +N+A+++F RM++  C+PD   Y T+I+
Sbjct: 429 ---LIHSYGRANYLNEAVSVFDRMQEAGCQPDRVTYCTLID 466


>GSVIVT01026360001 assembled CDS
          Length = 454

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 74  HRSPLKQRNLKQESCKYRDKVLVLGPAAYRDHKRVNVGLNKAMEFFYWLETHFSFAHTEM 133
           H S + +R+   E    +  + V     YR  +       +++ FF W  +H S+  T +
Sbjct: 52  HISAIVRRDFYLERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTL 111

Query: 134 TCREMACVLARGNRLDKLWQFLKDMGRRENGVGVKLVTTNTITCLIKVLGEEGLVNQALA 193
              E+   LAR  +   +W+    M         + ++   ++ +I+  G+ GLV+QA+ 
Sbjct: 112 EYEELLKTLARTKQFQPMWKIAHQM---------QTLSPTVVSSIIEEFGKHGLVDQAVE 162

Query: 194 LFYRMKQ-YHCKPDVYAYNTIINAL 217
           +F + K   +C   +  YN+++ AL
Sbjct: 163 VFNKAKSALNCPQTIEVYNSLLFAL 187


>GSVIVT01033259001 assembled CDS
          Length = 722

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 103 RDHKRVNVGLNKAMEFFYWLETHFSFAHTEMTCREMACVLARGNRLDKLWQFLKDMGRRE 162
           R+ +R  +G      FF W     SF  + +T   +  +LA+ +  D  W+ L+++  + 
Sbjct: 72  REQRRPELGF----RFFIWTTRRRSF-RSWVTHNLVIDMLAKDDGFDTYWKILEEL--KN 124

Query: 163 NGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
           + + +      T + LI    + G+  +A+  F +MK + CKPDV+ YN+I++ +
Sbjct: 125 SNIQI---PPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVM 176


>GSVIVT01008016001 assembled CDS
          Length = 764

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 162 ENGVGVKLVTTNTITCLIKVLGEEGLVNQALALFYRMKQYHCKPDVYAYNTIINAL 217
           E G+   LV  NT   L+K L ++GL+ QAL L   M +  C PD++ YN +IN L
Sbjct: 383 EKGLKPNLVLCNT---LVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGL 435