Jatropha Genome Database

JcCB0510111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0510111.10 + phase: 0 
         (168 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009881001 assembled CDS                                       242   7e-65
GSVIVT01018793001 assembled CDS                                       192   5e-50
GSVIVT01032798001 assembled CDS                                       125   1e-29
GSVIVT01030494001 assembled CDS                                       124   2e-29
GSVIVT01032799001 assembled CDS                                       124   3e-29
GSVIVT01019523001 assembled CDS                                       121   1e-28
GSVIVT01012043001 assembled CDS                                       116   5e-27
GSVIVT01037709001 assembled CDS                                       116   5e-27
GSVIVT01037210001 assembled CDS                                       115   1e-26
GSVIVT01019664001 assembled CDS                                       115   1e-26
GSVIVT01035481001 assembled CDS                                       114   2e-26
GSVIVT01024179001 assembled CDS                                       112   7e-26
GSVIVT01018617001 assembled CDS                                       110   4e-25
GSVIVT01019420001 assembled CDS                                       106   6e-24
GSVIVT01018619001 assembled CDS                                       104   3e-23
GSVIVT01028042001 assembled CDS                                       100   3e-22
GSVIVT01010049001 assembled CDS                                        99   7e-22
GSVIVT01023102001 assembled CDS                                        92   8e-20
GSVIVT01006152001 assembled CDS                                        82   1e-16

>GSVIVT01009881001 assembled CDS
          Length = 525

 Score =  242 bits (617), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 115/166 (69%), Positives = 132/166 (79%)

Query: 1   MGKKSRSRGCFGWFXXXXXXXXXXXXXXXXXXXXXHKSDDAGAVPGPPGAIDKKYADALK 60
           MG++S+S+G  GWF                       SD A  VPGPPGAIDKKY+DALK
Sbjct: 1   MGQRSKSKGWCGWFIVLVVAALVAAVIVISIRKRSDHSDKAAPVPGPPGAIDKKYSDALK 60

Query: 61  VAMQFFDVQKSGNLEDNEISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFGFPMAFTATV 120
           +AMQFFD+QKSG LE+N+ISWRG+S + DGS+AK+DLSKGMYDAGDH+KFGFPMAFTATV
Sbjct: 61  LAMQFFDIQKSGKLENNKISWRGNSALQDGSEAKLDLSKGMYDAGDHIKFGFPMAFTATV 120

Query: 121 LSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           LSWAILEYGDQMD V+QLEPA+DSLKWITDYL+NAH S NVLYIQV
Sbjct: 121 LSWAILEYGDQMDVVDQLEPAQDSLKWITDYLINAHPSENVLYIQV 166


>GSVIVT01018793001 assembled CDS
          Length = 526

 Score =  192 bits (489), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 105/130 (80%)

Query: 37  KSDDAGAVPGPPGAIDKKYADALKVAMQFFDVQKSGNLEDNEISWRGDSGINDGSQAKVD 96
           +     +VP  PG I + YADALK+A+QFFD+QKSG L +N+I WRGDSG+ DG +  +D
Sbjct: 37  RHSKVSSVPDRPGKIAENYADALKIAIQFFDIQKSGKLVNNKIDWRGDSGLEDGREEMLD 96

Query: 97  LSKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAH 156
           LSKGMYDAGDHMKFGFPMAFTATVLSWAILEYGD M AV QL  A+ SLKWITDYL+NAH
Sbjct: 97  LSKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDHMKAVKQLGNAQASLKWITDYLINAH 156

Query: 157 ASANVLYIQV 166
            S N+LY+QV
Sbjct: 157 PSPNLLYVQV 166


>GSVIVT01032798001 assembled CDS
          Length = 462

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 80/119 (67%), Gaps = 1/119 (0%)

Query: 49  GAIDKKYADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDH 107
           GA    Y  AL  ++ +F+ Q+SG L  N+ + WRGDS + DG+ A VDL  G YDAGD+
Sbjct: 19  GAASSNYGAALTKSLLYFEAQRSGKLPPNQRVLWRGDSALQDGNDAGVDLVGGYYDAGDN 78

Query: 108 MKFGFPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           +KFGFP AFT T+LSW ++EYG Q+ A  +L  A +++KW TDY + AH   NVLY QV
Sbjct: 79  VKFGFPHAFTVTLLSWGVIEYGQQLAAKKELGHAMEAIKWGTDYFIKAHTQPNVLYGQV 137


>GSVIVT01030494001 assembled CDS
          Length = 1179

 Score =  124 bits (312), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/113 (48%), Positives = 79/113 (69%), Gaps = 1/113 (0%)

Query: 55  YADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFGFP 113
           Y DAL  ++ +F+ Q+SG L  N+ + WR  SG+ DG +  VDL  G YDAGDH+KFG P
Sbjct: 35  YTDALSKSLLYFEAQRSGRLPHNQRVVWRDHSGLTDGLEQGVDLVGGYYDAGDHVKFGLP 94

Query: 114 MAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           MAFT T+LSW ++EY +++ +  +LE A +++KW TDY + AH S NVL+ +V
Sbjct: 95  MAFTVTMLSWGVIEYRNEIGSAGELEHALEAIKWGTDYFIKAHTSPNVLWAEV 147


>GSVIVT01032799001 assembled CDS
          Length = 483

 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 82/119 (68%), Gaps = 1/119 (0%)

Query: 49  GAIDKKYADALKVAMQFFDVQKSGNLEDNEIS-WRGDSGINDGSQAKVDLSKGMYDAGDH 107
           GA+   Y  AL  ++ +F+ Q+SG L  N+ + WRGDS + DG  A VDL  G YDAGD+
Sbjct: 19  GAVSVDYGSALTKSILYFEAQRSGKLPSNQRAKWRGDSALKDGGDAGVDLVGGYYDAGDN 78

Query: 108 MKFGFPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           +KFGFP AFT T+LSW+++++G Q+ A  +L+ A  ++KW TDY + AH  ANVLY QV
Sbjct: 79  VKFGFPQAFTVTMLSWSVIDFGSQLSAKKELDNALAAIKWGTDYFIKAHPQANVLYGQV 137


>GSVIVT01019523001 assembled CDS
          Length = 629

 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 79/113 (69%), Gaps = 1/113 (0%)

Query: 55  YADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFGFP 113
           Y  AL   + FF+ Q+SG L  N+ + WR DSG++DG  + VDL  G YDAGD++KFG P
Sbjct: 31  YGQALTKGILFFEAQRSGYLPSNQRVKWRADSGLHDGKASGVDLVGGYYDAGDNVKFGLP 90

Query: 114 MAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           MAFT T++SW+I+EYG QM A  +L  A +++KW TDYL+ AH   +VLY +V
Sbjct: 91  MAFTVTMMSWSIVEYGKQMAANGELGHAMEAVKWGTDYLIKAHPHPDVLYGEV 143


>GSVIVT01012043001 assembled CDS
          Length = 615

 Score =  116 bits (291), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 76/113 (67%), Gaps = 1/113 (0%)

Query: 55  YADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFGFP 113
           Y DA++ ++ FF+ Q+SG L  N+ + WRGDSG+ DG    VDL  G YDAGDH+KFG P
Sbjct: 30  YGDAMEKSLMFFEAQRSGKLPVNQRVKWRGDSGLRDGLLQGVDLVGGYYDAGDHVKFGLP 89

Query: 114 MAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           MAFT T+LSW  ++Y  ++  +NQ+     ++KW TDY + AH   +VL+ QV
Sbjct: 90  MAFTVTMLSWGAIDYRKEITGLNQMGDTLAAIKWGTDYFIKAHTEPDVLWGQV 142


>GSVIVT01037709001 assembled CDS
          Length = 478

 Score =  116 bits (290), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 76/113 (67%), Gaps = 1/113 (0%)

Query: 55  YADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFGFP 113
           Y  AL  ++ +F+ Q+SG L  N+ ++WR  SG+ DG +  VDL  G YDAGD++KFG P
Sbjct: 29  YHQALSNSLLYFETQRSGRLPHNQRVTWRDHSGLTDGLEQGVDLVGGYYDAGDNVKFGLP 88

Query: 114 MAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           MAFT T+LSW ++EYG  M +  +   A +++KW TDY + AH   NVL++QV
Sbjct: 89  MAFTVTMLSWGVIEYGQYMASAGEYGHALEAIKWGTDYFIKAHTQPNVLWVQV 141


>GSVIVT01037210001 assembled CDS
          Length = 494

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 81/123 (65%), Gaps = 4/123 (3%)

Query: 46  GPPGAIDKKYADALKVAMQFFDVQKSGNLED-NEISWRGDSGINDGSQAKVDLSKGMYDA 104
           G P      Y DAL  ++ FF  Q+SG L    ++SWR +SG++DGS A+VDL+ G YDA
Sbjct: 25  GCPSLGHPNYKDALAKSILFFQGQRSGRLPTGQQMSWRSNSGLSDGSLARVDLTGGYYDA 84

Query: 105 GDHMKFGFPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVN-AHASANVLY 163
           GD++KF FPMAF  T+LSW  LEYG +M    QL+ ++ +++W TDYL+  A  + N LY
Sbjct: 85  GDNVKFNFPMAFATTMLSWGTLEYGKRMGP--QLQNSRAAIRWATDYLIKCATTTPNTLY 142

Query: 164 IQV 166
           + V
Sbjct: 143 VGV 145


>GSVIVT01019664001 assembled CDS
          Length = 419

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 85/116 (73%), Gaps = 4/116 (3%)

Query: 53  KKYADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFG 111
           K YADAL  ++ F++ Q+SG L  ++ ++WRGDSG++DGS   VDL  G YDAGD++KFG
Sbjct: 31  KDYADALAKSILFYEGQRSGKLPSSQRLTWRGDSGLSDGSSYHVDLVGGYYDAGDNVKFG 90

Query: 112 FPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVN-AHASANVLYIQV 166
            PMAFT T+L+W+++E+G+ M +  Q+  A+ +++W TDYL+  A A+   LY+QV
Sbjct: 91  LPMAFTTTLLAWSVIEFGNSMPS--QIGNARAAIRWSTDYLLKAATATPGTLYVQV 144


>GSVIVT01035481001 assembled CDS
          Length = 972

 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 74/116 (63%), Gaps = 1/116 (0%)

Query: 52  DKKYADALKVAMQFFDVQKSGNLE-DNEISWRGDSGINDGSQAKVDLSKGMYDAGDHMKF 110
           D  Y DAL  ++ F + Q+SG L  +N + WRGDS + DG     DL  G YDAGD++K+
Sbjct: 30  DINYKDALTKSLIFLEAQRSGKLPANNRLPWRGDSALEDGKLVNADLVGGYYDAGDNVKY 89

Query: 111 GFPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           G PMAFT T LSW+ + Y  ++ A  +LE  +D++KW TDY + A+   N LY+QV
Sbjct: 90  GLPMAFTVTTLSWSAIFYESELKATGELENMRDAIKWGTDYFLKAYPRKNRLYVQV 145



 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 76/116 (65%), Gaps = 1/116 (0%)

Query: 52  DKKYADALKVAMQFFDVQKSGNLE-DNEISWRGDSGINDGSQAKVDLSKGMYDAGDHMKF 110
           D  Y +AL  ++ F + Q+SG L   + ++WRG+S ++DG  A VDL  G YDAGD++KF
Sbjct: 515 DFNYKEALTKSIIFLEAQRSGKLPPTSRLAWRGNSALDDGKLANVDLVGGYYDAGDNVKF 574

Query: 111 GFPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           G PMAFT T LSWA + Y  ++ A  +LE  + ++KW TDY + A +  N LY+QV
Sbjct: 575 GLPMAFTITTLSWAAIFYEAELGASEELENVRAAIKWGTDYFLKASSQKNRLYVQV 630


>GSVIVT01024179001 assembled CDS
          Length = 473

 Score =  112 bits (281), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 80/113 (70%), Gaps = 2/113 (1%)

Query: 55  YADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFGFP 113
           Y+DAL   + FF+ Q+SG L + + ISWR +SG++DG Q  VDL+ G YDAGD++KFGFP
Sbjct: 29  YSDALSKCILFFEGQRSGFLPNGQRISWRANSGLSDGWQRSVDLTGGYYDAGDNIKFGFP 88

Query: 114 MAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           MAFT T+L+W+++E+GD M A  +L     +++W TDYL+   +    +++QV
Sbjct: 89  MAFTTTMLAWSVIEFGDSMPA-GELRNTMVAIRWATDYLLKTVSQPGRIFVQV 140


>GSVIVT01018617001 assembled CDS
          Length = 486

 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 53  KKYADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFG 111
           + Y DAL  ++ FF+ Q+SG L  ++ ++WR DSG+NDG   KVDL+ G YDAGD++KF 
Sbjct: 24  QDYGDALTKSILFFEGQRSGKLPSSQRVNWRKDSGVNDGKDVKVDLTGGYYDAGDNVKFN 83

Query: 112 FPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVL 162
           FPMAFT T+L+W+++E+G  MD    L+ A D+++W TDYL+ A  +   +
Sbjct: 84  FPMAFTTTLLAWSVIEFGQFMDP--DLQNALDAVRWGTDYLLKATTTPGTV 132


>GSVIVT01019420001 assembled CDS
          Length = 503

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 76/113 (67%), Gaps = 1/113 (0%)

Query: 55  YADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFGFP 113
           Y +AL  A+ FF+ Q+SG L  ++ + WRGDS ++DG    V L  G YDAGD++KFG+P
Sbjct: 36  YGEALGKAILFFEGQRSGKLPSSQRVKWRGDSALSDGMPENVKLIGGYYDAGDNVKFGWP 95

Query: 114 MAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           MAF+ ++LSWA +EY  ++ +V QL     +++W  ++++ AH S+  LY QV
Sbjct: 96  MAFSVSLLSWAAVEYRREISSVKQLTYLLQAIRWGANFILRAHTSSTTLYTQV 148


>GSVIVT01018619001 assembled CDS
          Length = 470

 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 79/115 (68%), Gaps = 3/115 (2%)

Query: 53  KKYADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFG 111
           + Y DAL  ++ FF+ Q+SG L  ++ ++WR DS +NDG+++ VDL  G YDAGD++KF 
Sbjct: 9   QNYEDALTKSILFFEGQRSGRLPPSQRMTWRKDSALNDGTESNVDLVGGYYDAGDNVKFN 68

Query: 112 FPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASANVLYIQV 166
           FPMAFT T+L+W++LE+G  M +   L+ A D+++W TDY + A +    ++  V
Sbjct: 69  FPMAFTTTLLAWSVLEFGQFMGS--DLQYALDAIRWGTDYFLKATSIPGTVFAIV 121


>GSVIVT01028042001 assembled CDS
          Length = 439

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 66/88 (75%), Gaps = 2/88 (2%)

Query: 79  ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDQMDAVNQL 138
           ++WR DSG++DG+   VDL  G YDAGD++KFGFPMAFT T+LSW+++E+G  M    +L
Sbjct: 1   MTWRRDSGLSDGAAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKG--EL 58

Query: 139 EPAKDSLKWITDYLVNAHASANVLYIQV 166
           + AK++++W TDYL+ A    + +Y+QV
Sbjct: 59  QHAKEAIRWATDYLLKATVHPDTIYVQV 86


>GSVIVT01010049001 assembled CDS
          Length = 505

 Score = 99.4 bits (246), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 9/124 (7%)

Query: 53  KKYADALKVAMQFFDVQKSGNLEDNE-ISWRGDSGINDGSQAKVDLSKGMYDAGDHMKFG 111
           K    A+  A+ FF+ QKSG L  N  +S+RGDSG+ DG+ +  +L  G YD+G+++KF 
Sbjct: 112 KNLTHAINQALTFFEAQKSGYLPKNSSVSFRGDSGLQDGNSSGHNLVGGFYDSGNNIKFS 171

Query: 112 FPMAFTATVLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLV--------NAHASANVLY 163
           FP A+T T+LSW ++EY  +   + +LE  KD +KW +DYL+        +  +S  +LY
Sbjct: 172 FPTAYTITLLSWTVIEYHQKYADIGELEHVKDIIKWGSDYLLKLFIPPIKSTSSSTTILY 231

Query: 164 IQVN 167
            Q +
Sbjct: 232 SQAS 235


>GSVIVT01023102001 assembled CDS
          Length = 501

 Score = 92.4 bits (228), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 64/100 (64%), Gaps = 5/100 (5%)

Query: 65  FFDVQKSGNL-EDNEISWRGDSGINDGSQAK----VDLSKGMYDAGDHMKFGFPMAFTAT 119
           FF+ Q+SG L + N +SWRG+SG+NDG         DL  G YDAGD +KF FPM+F  T
Sbjct: 2   FFNAQRSGKLPKHNNVSWRGNSGMNDGKSETGSFYKDLVGGYYDAGDAIKFNFPMSFAMT 61

Query: 120 VLSWAILEYGDQMDAVNQLEPAKDSLKWITDYLVNAHASA 159
           +LSW+++EY  + +A  +L   K+ +KW TDY +    S+
Sbjct: 62  MLSWSVIEYSAKYEAAGELNHVKEIIKWGTDYFLKTFNSS 101


>GSVIVT01006152001 assembled CDS
          Length = 191

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 61/90 (67%), Gaps = 4/90 (4%)

Query: 68  VQKSGNL-EDNEISWRGDSGINDG---SQAKVDLSKGMYDAGDHMKFGFPMAFTATVLSW 123
            + SG L + N I+WRG+SG+ DG   +  K  L  G YDAGD++KF FPMA+  T+LSW
Sbjct: 25  TKTSGKLPKSNGIAWRGNSGLEDGKDLTDVKGGLVGGYYDAGDNIKFHFPMAYAMTMLSW 84

Query: 124 AILEYGDQMDAVNQLEPAKDSLKWITDYLV 153
           +++EY  + +A+++    +D +KW TDYL+
Sbjct: 85  SVIEYRHKYEAIDEYNHVRDLIKWGTDYLL 114