Jatropha Genome Database

JcCB0510081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0510081.10 - phase: 0 
         (118 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000485001 assembled CDS                                       226   2e-60
GSVIVT01021430001 assembled CDS                                       226   2e-60
GSVIVT01021433001 assembled CDS                                        88   9e-19

>GSVIVT01000485001 assembled CDS
          Length = 178

 Score =  226 bits (576), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/115 (92%), Positives = 111/115 (96%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNG+VEQMYTEMASRHRVR+PCI
Sbjct: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGSVEQMYTEMASRHRVRYPCI 123

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT TIPAKLCKRES+KQ HNSKIKFPLV +KVRPPTRKL+TTYKASRPNLFM
Sbjct: 124 QIIKTATIPAKLCKRESTKQMHNSKIKFPLVVRKVRPPTRKLKTTYKASRPNLFM 178


>GSVIVT01021430001 assembled CDS
          Length = 178

 Score =  226 bits (576), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/115 (93%), Positives = 109/115 (94%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCI 63
           N IFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYAEMASRHRVRSPCI 123

Query: 64  QIIKTGTIPAKLCKRESSKQFHNSKIKFPLVFKKVRPPTRKLRTTYKASRPNLFM 118
           QIIKT TIPAKLCKRESSKQFHNSKIKFPL F+KVRPPTRKL+TTYKASRPNLFM
Sbjct: 124 QIIKTATIPAKLCKRESSKQFHNSKIKFPLTFRKVRPPTRKLKTTYKASRPNLFM 178


>GSVIVT01021433001 assembled CDS
          Length = 124

 Score = 87.8 bits (216), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/42 (92%), Positives = 40/42 (95%)

Query: 4   NLIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAV 45
           N IFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA+
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAL 105