Jatropha Genome Database

JcCB0508071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0508071.10 + phase: 0 /partial
         (136 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022808001 assembled CDS                                        69   6e-13
GSVIVT01035957001 assembled CDS                                        55   1e-08

>GSVIVT01022808001 assembled CDS
          Length = 1082

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/34 (88%), Positives = 32/34 (94%)

Query: 61  APRKTSLKPLHWVKVTRAVQGSLWADSQKQENLS 94
           AP+K SL+PLHWVKVTRAVQGSLWADSQKQEN S
Sbjct: 657 APKKASLRPLHWVKVTRAVQGSLWADSQKQENQS 690


>GSVIVT01035957001 assembled CDS
          Length = 1642

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 28/33 (84%)

Query: 62  PRKTSLKPLHWVKVTRAVQGSLWADSQKQENLS 94
           P+K SLKP HW+K+TRA+QGSLWA++Q+ E  S
Sbjct: 683 PKKASLKPYHWLKLTRAMQGSLWAETQRPEEAS 715