Jatropha Genome Database

JcCB0507301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0507301.10 - phase: 0 /partial
         (221 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025364001 assembled CDS                                       312   8e-86
GSVIVT01033502001 assembled CDS                                       295   2e-80
GSVIVT01032803001 assembled CDS                                       126   8e-30
GSVIVT01024726001 assembled CDS                                       124   2e-29
GSVIVT01011171001 assembled CDS                                       104   2e-23
GSVIVT01024725001 assembled CDS                                        96   9e-21
GSVIVT01003874001 assembled CDS                                        71   3e-13

>GSVIVT01025364001 assembled CDS
          Length = 412

 Score =  312 bits (799), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 153/221 (69%), Positives = 173/221 (78%), Gaps = 33/221 (14%)

Query: 1   MGAGGRMSVPPSPKKLEAEVLKRVPYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDL 60
           MGAGGR+SVP SP       ++RVP++KPPFTLGQ+KKAIPPHCFQRS+ RSFSYV YDL
Sbjct: 45  MGAGGRLSVPNSP-------VQRVPHTKPPFTLGQIKKAIPPHCFQRSIPRSFSYVAYDL 97

Query: 61  TLAFIFYYVATNYFHLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDD 120
           +LAF+FYY+AT+YF LLP  L+Y+AWP+YW+LQGC LTG+WVIAHECGHHAFSDYQWLDD
Sbjct: 98  SLAFLFYYIATSYFSLLPSWLTYLAWPLYWTLQGCTLTGVWVIAHECGHHAFSDYQWLDD 157

Query: 121 IVGLLLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLF 180
            VGL+LHS LLVPYFSWK SHRRHHSNTGSLE                            
Sbjct: 158 TVGLILHSSLLVPYFSWKISHRRHHSNTGSLEP--------------------------L 191

Query: 181 TLTITLALGWPLYLAFNVSGRHYDRFACHFDPYGPIYNDRE 221
           TL ITL LGWPLYLAFNVSGR Y+RFACH+DPYGPIY+DRE
Sbjct: 192 TLVITLTLGWPLYLAFNVSGRPYNRFACHYDPYGPIYSDRE 232


>GSVIVT01033502001 assembled CDS
          Length = 286

 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/213 (66%), Positives = 159/213 (74%), Gaps = 34/213 (15%)

Query: 1   MGAGGRMSVPPSPKKLEAEVLKRVPYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDL 60
           MGAGGRMS PPS KK EA++++R P+SKP FTL Q+KKAIPPHCFQRSVL SFSYV+ DL
Sbjct: 25  MGAGGRMSAPPSAKKSEADIVQRAPHSKPQFTLSQLKKAIPPHCFQRSVLHSFSYVISDL 84

Query: 61  TLAFIFYYVATNYFHLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDD 120
           T A + YY+ATNYFHLLP PLSY+AWPIYW+ QGC+LTG+WVIAHECGHHAFSDYQWLDD
Sbjct: 85  TWASLLYYIATNYFHLLPHPLSYLAWPIYWAFQGCILTGVWVIAHECGHHAFSDYQWLDD 144

Query: 121 IVGLLLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLF 180
            VGL+LHS LLVPYFSWK+SHRRHHSNTGSLE+DEVFVPK KS + W             
Sbjct: 145 TVGLILHSSLLVPYFSWKYSHRRHHSNTGSLEKDEVFVPKTKSKLGW------------- 191

Query: 181 TLTITLALGWPLYLAFNVSGRHYDRFACHFDPY 213
                                 Y RFACHFDP+
Sbjct: 192 ---------------------RYSRFACHFDPH 203


>GSVIVT01032803001 assembled CDS
          Length = 449

 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 105/199 (52%), Gaps = 17/199 (8%)

Query: 25  PYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLTLAFIFYYVATNYFHLLPQPLSYV 84
           P + PPF L +++ AIP HC+ +   RS SYVV D+ + F     A  + H       + 
Sbjct: 95  PGAPPPFRLAEIRAAIPKHCWMKDPWRSMSYVVRDVAVVFGLAAAAAYFNH-------WA 147

Query: 85  AWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPYFSWKHSHRRH 144
            WP+YW  QG +   ++V+ H+CGH +FS    L+ +VG LLHS +LVPY  W+ SHR H
Sbjct: 148 VWPLYWFAQGTMFWALFVLGHDCGHGSFSSNPKLNSVVGHLLHSSILVPYHGWRISHRTH 207

Query: 145 HSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLFTLTITLALGWPLYLAFNVSGRHYD 204
           H N G +E DE + P  +   R        L    FTL   + L +PLYL     GR   
Sbjct: 208 HQNHGHVENDESWHPLSEKIYRSLDTATRTL---RFTLPFPM-LAYPLYLW----GRSPG 259

Query: 205 RFACHFDPYGPIY--NDRE 221
           +   HFDP   ++  N+R+
Sbjct: 260 KTGSHFDPNSDLFIPNERK 278


>GSVIVT01024726001 assembled CDS
          Length = 446

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 21/196 (10%)

Query: 25  PYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLTLAFIFYYVATNYFHLLPQPLSYV 84
           P + PPF L +V+  IP HC+ +   +S SYV  D  + F    +A  Y         +V
Sbjct: 90  PSAPPPFRLAEVRAVIPKHCWVKDPWKSMSYVFRDFIVIFGLA-IAAIYLD------RWV 142

Query: 85  AWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPYFSWKHSHRRH 144
            WP+YW+ QG +   ++V+ H+CGH +FSD   L+ +VG LLHS +LVPY  W+ SHR H
Sbjct: 143 VWPLYWAAQGTMFWALFVLGHDCGHGSFSDNPMLNSMVGHLLHSTILVPYNGWRISHRTH 202

Query: 145 HSNTGSLERDEVFVPKKKSNIRWFSKYLNNLPGRLFTLTITL---ALGWPLYLAFNVSGR 201
           H N G +E DE +VP  +       K   +L  +  TL  TL      +PLYL +   G+
Sbjct: 203 HQNQGHVENDESWVPFPE-------KLYRSLDAKTRTLRFTLPFPMFAYPLYLWYRSPGK 255

Query: 202 HYDRFACHFDPYGPIY 217
                  HF+PY  ++
Sbjct: 256 E----GSHFNPYSDMF 267


>GSVIVT01011171001 assembled CDS
          Length = 439

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 104/203 (51%), Gaps = 27/203 (13%)

Query: 25  PYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDLT----LAFIFYYVATNYFHLLPQP 80
           P + PPF L  ++ AIP HC+ +   RS SYVV D+     LA    Y+           
Sbjct: 85  PGAPPPFKLADIRAAIPKHCWVKDPWRSMSYVVRDVVVVCGLAAAAAYLN---------- 134

Query: 81  LSYVAWPIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDDIVGLLLHSCLLVPYFSWKHS 140
            ++V WP+YW+ QG +   ++V+ H+CGH +FS+   L+ +VG LLHS +LVPY  W+ S
Sbjct: 135 -NWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNPTLNSVVGHLLHSSILVPYHGWRIS 193

Query: 141 HRRHHSNTGSLERDEVFVPKKKSNIRWFSKYLN-NLPGRLFTLTITL-ALGWPLYLAFNV 198
           HR HH N G +E DE + P  +        Y N ++  R+   T+    L +P YL    
Sbjct: 194 HRTHHQNHGHVENDESWHPLPE------RIYKNLDVVTRMLRFTVPFPMLAYPFYLWSRS 247

Query: 199 SGRHYDRFACHFDPYGPIYNDRE 221
            G    +   HFDP   ++   E
Sbjct: 248 PG----KTGSHFDPSSDLFVPSE 266


>GSVIVT01024725001 assembled CDS
          Length = 329

 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 17/170 (10%)

Query: 53  FSYVVYDLTLAFIFYYVATNYFHLLPQPLSYVAWPIYWSLQGCVLTGIWVIAHECGHHAF 112
            SYV+ D+ + F     A           S++ WP+YW+ QG +   ++V+ H+CGH +F
Sbjct: 1   MSYVLRDVVVVFGLAVAAI-------YSDSWLVWPLYWAAQGTMFWALFVLGHDCGHGSF 53

Query: 113 SDYQWLDDIVGLLLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSNIRWFSKYL 172
           SD   L+ IVG LLHS +LVPY  W+ SHR HH N G +E DE +VP  +       K L
Sbjct: 54  SDNPKLNSIVGHLLHSWILVPYHGWRISHRTHHQNHGHVENDESWVPLPEK----MYKNL 109

Query: 173 NNLPGRLFTLTITLAL-GWPLYLAFNVSGRHYDRFACHFDPYGPIYNDRE 221
           +N   R+F  T+   +  +P+YL     G+       HF+P   ++   E
Sbjct: 110 DN-STRIFRFTVPFPIFAYPMYLWHRSPGKK----GSHFNPNSDLFPTSE 154


>GSVIVT01003874001 assembled CDS
          Length = 441

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 7   MSVPPSPKKLE-AEVLKRVPYSKPPFTLGQVKKAIPPHCFQRSVLRSFSYVVYDL--TLA 63
           +++P +P  ++ AE  K++  S   +   Q+ + +P +   R V+ +    V+++    A
Sbjct: 64  VAIPVAPSPIDSAEYRKQLAES---YGFEQIGEPLPENVTLRDVIDTIPKKVFEIDDVKA 120

Query: 64  FIFYYVATNYFHLLPQPLSYVAW---PIYWSLQGCVLTGIWVIAHECGHHAFSDYQWLDD 120
           +    ++   + L    +S   W   P+ W+  G  +TG +VI H+C H +FS  + L+D
Sbjct: 121 WKSVLISATSYALGLFMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSRNKLLED 180

Query: 121 IVGLLLHSCLLVPYFSWKHSHRRHHSNTGSLERDEVFVPKKKSN 164
           IVG L    L+ PY  W+  H RHH+ T  L  D  + P  K  
Sbjct: 181 IVGTLAFLPLIYPYEPWRFKHDRHHAKTNMLSEDTAWHPVLKEE 224