Jatropha Genome Database

JcCB0506361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0506361.10 + phase: 0 /pseudo/partial
         (235 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008832001 assembled CDS                                       244   2e-65

>GSVIVT01008832001 assembled CDS
          Length = 204

 Score =  244 bits (623), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/148 (80%), Positives = 125/148 (84%)

Query: 6   RAKYITGTVDALQSKPGGGAEWLSSLRKSDLQVVVDALCTLPGVGPKVASCIALFSLDQH 65
           RAKYI GTV ALQSK GGG EWL+SLR+ DLQ VVDAL TLPGVGPKVA+CIALFSLDQH
Sbjct: 45  RAKYIIGTVKALQSKSGGGIEWLASLREMDLQEVVDALSTLPGVGPKVAACIALFSLDQH 104

Query: 66  HAIPVDTHVWQIATRYLLPELAAVRLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPS 125
           HAIPVDTHVWQIATRYL+PELA  RLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPS
Sbjct: 105 HAIPVDTHVWQIATRYLIPELAGARLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPS 164

Query: 126 QKTLLPSHFWTINEKKSATKKGCXVDSG 153
           QKT+LP  FW I E K    K     +G
Sbjct: 165 QKTILPPKFWAIEENKDTNIKASTTGNG 192