Jatropha Genome Database

JcCB0504061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.20 + phase: 1 /pseudo/partial
         (72 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018190001 assembled CDS                                        61   1e-10
GSVIVT01028332001 assembled CDS                                        60   3e-10
GSVIVT01028330001 assembled CDS                                        60   3e-10

>GSVIVT01018190001 assembled CDS
          Length = 332

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 30/33 (90%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILHMLDIE AA+AL GVK
Sbjct: 23 PMIARGLMLGPDQPVILHMLDIEPAAEALNGVK 55


>GSVIVT01028332001 assembled CDS
          Length = 332

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/33 (78%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILHMLDI  AA+AL GVK
Sbjct: 23 PMIARGVMLGADQPVILHMLDIPPAAEALNGVK 55


>GSVIVT01028330001 assembled CDS
          Length = 332

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/33 (78%), Positives = 29/33 (87%)

Query: 22 PMVARGIMLGLDQPVILHMLDIESAAKALEGVK 54
          PM+ARG+MLG DQPVILHMLDI  AA+AL GVK
Sbjct: 23 PMIARGVMLGADQPVILHMLDIPPAAEALNGVK 55