Jatropha Genome Database

JcCB0504061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0504061.10 + phase: 1 /partial
         (83 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018190001 assembled CDS                                       163   1e-41
GSVIVT01028332001 assembled CDS                                       139   2e-34
GSVIVT01028330001 assembled CDS                                       139   2e-34
GSVIVT01016172001 assembled CDS                                        49   3e-07

>GSVIVT01018190001 assembled CDS
          Length = 332

 Score =  163 bits (413), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/81 (91%), Positives = 76/81 (93%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTPKG WVSMGVYSDGSYGIQPG+IYSFPVTCEKG WSIVQGLKIDEFSR 
Sbjct: 252 CDHIRDWVLGTPKGAWVSMGVYSDGSYGIQPGIIYSFPVTCEKGEWSIVQGLKIDEFSRG 311

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           KMDATAKEL EEK+LAYSCLN
Sbjct: 312 KMDATAKELMEEKALAYSCLN 332


>GSVIVT01028332001 assembled CDS
          Length = 332

 Score =  139 bits (351), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 69/81 (85%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTP+GTWVSMGVYSDGSY +  GLIYSFPVTC  G W IVQGL IDEFSR 
Sbjct: 252 CDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCCAGEWKIVQGLHIDEFSRK 311

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           K+D TA+EL+EEK LAYSCL+
Sbjct: 312 KLDLTAQELSEEKELAYSCLS 332


>GSVIVT01028330001 assembled CDS
          Length = 332

 Score =  139 bits (351), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 69/81 (85%)

Query: 3   CDHIRDWVPGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGNWSIVQGLKIDEFSRA 62
           CDHIRDWV GTP+GTWVSMGVYSDGSY +  GLIYSFPVTC  G W IVQGL IDEFSR 
Sbjct: 252 CDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCCAGEWKIVQGLHIDEFSRK 311

Query: 63  KMDATAKELTEEKSLAYSCLN 83
           K+D TA+EL+EEK LAYSCL+
Sbjct: 312 KLDLTAQELSEEKELAYSCLS 332


>GSVIVT01016172001 assembled CDS
          Length = 437

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 4   DHIRDWVPGTPKGTWVSMGVYSDGS-YGIQPGLIYSFPVTCE-KGNWSIVQGLKIDEFSR 61
           D ++  V  TP+G W S GVY+ G+ YG+  G+++S P   +  G++ +V+ +  DE+  
Sbjct: 338 DAMKSLVTPTPEGDWFSSGVYTTGNPYGVAEGIVFSMPCRSKGDGDYELVKDVIFDEYLL 397

Query: 62  AKMDATAKELTEEK 75
            ++  T  EL  EK
Sbjct: 398 KRITKTEAELLAEK 411