Jatropha Genome Database

JcCB0499981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0499981.10 + phase: 0 /pseudo/partial
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033099001 assembled CDS                                       130   3e-31

>GSVIVT01033099001 assembled CDS
          Length = 393

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/69 (89%), Positives = 65/69 (94%)

Query: 4   GGAKLADVLELVGISKLTSATKSGGKHVEFVSIDKCKEENGGPYKASIPLSQATNPEADV 63
           GGAKLADVLELVGI K TS T+SGGKHVEFVS+D CKEENGGPYKASIPLSQA+NPEADV
Sbjct: 128 GGAKLADVLELVGIPKFTSTTQSGGKHVEFVSVDMCKEENGGPYKASIPLSQASNPEADV 187

Query: 64  LLAYEMNGE 72
           LLAYEMNGE
Sbjct: 188 LLAYEMNGE 196