Jatropha Genome Database

JcCB0499871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0499871.10 - phase: 0 
         (277 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024084001 assembled CDS                                       254   2e-68
GSVIVT01018777001 assembled CDS                                       212   1e-55
GSVIVT01011386001 assembled CDS                                        61   4e-10
GSVIVT01030640001 assembled CDS                                        58   5e-09
GSVIVT01036203001 assembled CDS                                        57   1e-08
GSVIVT01007339001 assembled CDS                                        55   3e-08
GSVIVT01014589001 assembled CDS                                        54   7e-08
GSVIVT01027766001 assembled CDS                                        49   2e-06
GSVIVT01008025001 assembled CDS                                        48   6e-06

>GSVIVT01024084001 assembled CDS
          Length = 329

 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 134/207 (64%), Positives = 155/207 (74%), Gaps = 2/207 (0%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           DPDRPKNDKATIL+DTIQLLKDLT+QV KLKAE  +L EESRELTQEKNDLREEKASLKS
Sbjct: 73  DPDRPKNDKATILSDTIQLLKDLTAQVEKLKAENASLNEESRELTQEKNDLREEKASLKS 132

Query: 82  DIENLNIQYQQRLRSTYPWVAMDHSVVMAPTSYXXXXXXXXXXXXXX--XXXSMQPYPFF 139
             ENLN+QYQQRLR+ +PW A+D SVV++P SY                   SMQPYPFF
Sbjct: 133 ATENLNVQYQQRLRAMFPWSAIDPSVVVSPPSYPFPVPVPVPIPTGSIPMHPSMQPYPFF 192

Query: 140 GNQNPAVIHNPCSTFVPYVTPNTLVDQQSTQRASSFAQPASGSHVSGKQDSKIKLSGESK 199
           G+QN  +I NPCSTFVPY TPNTL++ QSTQ  S   QP S S++S KQDSK +  GESK
Sbjct: 193 GSQNTGIIPNPCSTFVPYFTPNTLIEPQSTQHVSPPMQPGSTSNISSKQDSKNESPGESK 252

Query: 200 VGKSLDSNDVTTELELKTPGSMTDQDL 226
             K  DS DV T+L+LKTPGS +DQ++
Sbjct: 253 SEKGEDSTDVATDLQLKTPGSKSDQEV 279


>GSVIVT01018777001 assembled CDS
          Length = 326

 Score =  212 bits (540), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 143/208 (68%), Gaps = 9/208 (4%)

Query: 22  DPDRPKNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKS 81
           DPDRPKNDKATILADTIQ+LKDLT++VN+LK E   L+EESREL QEKN+LREEK +LKS
Sbjct: 77  DPDRPKNDKATILADTIQMLKDLTAEVNRLKVECAALSEESRELVQEKNELREEKVALKS 136

Query: 82  DIENLNIQYQQRLRSTYPWVAMDHSVVMAPTSYXXXXXXXXXXXXXXXXXSMQPYPFFGN 141
           DI+NLN+QYQQRLR  +PW  +D SVVM P+ Y                 S+QP+PFFGN
Sbjct: 137 DIDNLNVQYQQRLRVMFPWAPIDPSVVMGPSPYSYPVPVPVPSGPIPMHPSLQPFPFFGN 196

Query: 142 QNPAVIHNPCSTFVPYVTPNTLVDQQSTQRASSFAQPASGSHVSGKQDSKIKLSGE---S 198
           QNP+ I NPCSTF+PY TP     +  +      AQ AS SHVS K DSK K S     S
Sbjct: 197 QNPSGIPNPCSTFIPYQTPANPPTEVPS------AQYASASHVSSKPDSKSKSSDRERSS 250

Query: 199 KVGKSLDSNDVTTELELKTPGSMTDQDL 226
              K  +SNDV T+LELKTPGS + QDL
Sbjct: 251 NTEKCDESNDVATDLELKTPGSSSQQDL 278


>GSVIVT01011386001 assembled CDS
          Length = 328

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 48/73 (65%)

Query: 28  NDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKSDIENLN 87
           N KA +L D  +LL+DL +QV+ LK +   L  ES  ++ EKN+LRE+ ++L++ I+ L 
Sbjct: 151 NGKACVLTDATRLLRDLLAQVDCLKRDNAALLSESHYVSMEKNELREDNSALEAQIKKLQ 210

Query: 88  IQYQQRLRSTYPW 100
            + ++R+RS   W
Sbjct: 211 SELEERIRSKPAW 223


>GSVIVT01030640001 assembled CDS
          Length = 223

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 22  DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P RP K DKA IL+D ++++  L S+  KLK     L E+ +EL  EKN+LR+EK  LK
Sbjct: 90  EPGRPPKTDKAAILSDAVRMVTQLRSEAQKLKESNGDLQEKIKELKAEKNELRDEKQRLK 149

Query: 81  SDIENLNIQYQ 91
           ++ E L  Q +
Sbjct: 150 AEKEKLEQQVK 160


>GSVIVT01036203001 assembled CDS
          Length = 154

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 5/76 (6%)

Query: 22 DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
          +P RP K DK++IL+D I +L  L ++  +LK +   L E+ R L  EK++LREEK  LK
Sbjct: 27 EPGRPPKTDKSSILSDAIHVLNQLRTEARELKGKTQKLREDIRTLKAEKSELREEKLILK 86

Query: 81 SDIENLNIQYQQRLRS 96
          +D E +    QQR+++
Sbjct: 87 ADKEKM----QQRVKA 98


>GSVIVT01007339001 assembled CDS
          Length = 225

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 22  DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P RP K DKA IL+D ++++  L S+  KLK     L E+  EL  EKN+LR+EK  LK
Sbjct: 92  EPGRPPKMDKAVILSDALRMMTQLRSEGQKLKKSCEDLQEKINELKAEKNELRDEKQRLK 151

Query: 81  SDIENL 86
           ++ EN+
Sbjct: 152 TEKENI 157


>GSVIVT01014589001 assembled CDS
          Length = 237

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 22  DPDRP-KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLK 80
           +P RP K DK++IL D ++++  L  +  KLK   ++L E+ +EL  EKN+LR+EK  LK
Sbjct: 104 EPGRPPKTDKSSILIDAVRMVTQLRGESQKLKDSNSSLQEKIKELKAEKNELRDEKQRLK 163

Query: 81  SDIENLNIQYQ 91
           ++ E L  Q +
Sbjct: 164 AEKEKLEQQLK 174


>GSVIVT01027766001 assembled CDS
          Length = 248

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%)

Query: 27  KNDKATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKSDIENL 86
           K DK  IL D I++L  L ++   L+     L EE R L  EKN+LREEK  LK+D E +
Sbjct: 126 KTDKLAILGDAIRVLNQLRNEAKDLEDANEKLQEEIRSLKAEKNELREEKLLLKADKERI 185

Query: 87  NIQYQ 91
             Q +
Sbjct: 186 EQQMK 190


>GSVIVT01008025001 assembled CDS
          Length = 195

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query: 30  KATILADTIQLLKDLTSQVNKLKAEYTTLTEESRELTQEKNDLREEKASLKSDIENLNIQ 89
           KA IL + I+L+KD  +Q++ LK E   L  ES  +  EKN+LR+E + L+  I+ L  +
Sbjct: 71  KAFILCEAIRLVKDTIAQIDCLKKENAALFSESHYVNIEKNELRDENSVLEDQIDKLQTE 130

Query: 90  YQQR 93
            ++R
Sbjct: 131 IKER 134