Jatropha Genome Database

JcCB0498951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0498951.10 + phase: 0 /pseudo/partial
         (236 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032103001 assembled CDS                                       145   2e-35
GSVIVT01032110001 assembled CDS                                       109   1e-24
GSVIVT01021507001 assembled CDS                                        65   3e-11
GSVIVT01036862001 assembled CDS                                        62   2e-10
GSVIVT01038080001 assembled CDS                                        59   2e-09
GSVIVT01024318001 assembled CDS                                        57   7e-09
GSVIVT01029057001 assembled CDS                                        55   2e-08

>GSVIVT01032103001 assembled CDS
          Length = 546

 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 79/93 (84%), Gaps = 1/93 (1%)

Query: 3   GPAIVEVNPKPNKGLTSKLVDYLEKLIVKLMFDKSQPLHYLNGNFAPV-PEAPPVKDLPV 61
           G  +V V+P P+KG TSK VD+LEKLIVKLM D SQPLHYL+GNFAPV  E PP K+LPV
Sbjct: 13  GAGVVVVDPTPSKGFTSKAVDWLEKLIVKLMHDSSQPLHYLSGNFAPVRDETPPCKNLPV 72

Query: 62  IGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
           IG+LPECLNGEFVRVGPNPKF+PVAGYH + G+
Sbjct: 73  IGYLPECLNGEFVRVGPNPKFSPVAGYHWFDGD 105


>GSVIVT01032110001 assembled CDS
          Length = 483

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 56/63 (88%), Gaps = 1/63 (1%)

Query: 33 MFDKSQPLHYLNGNFAPV-PEAPPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*W 91
          M+D SQPLHYL+GNFAPV  E PP K+LPVIG+LPECLNGEFVRVGPNPKF+PVAGYH +
Sbjct: 1  MYDSSQPLHYLSGNFAPVRDETPPCKNLPVIGYLPECLNGEFVRVGPNPKFSPVAGYHWF 60

Query: 92 KGN 94
           G+
Sbjct: 61 DGD 63


>GSVIVT01021507001 assembled CDS
          Length = 473

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 37  SQPLHYLNGNFAPVPEAPPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
           + P   + GNFAPVPE P    LPV G +P+C+NG ++R G NP F PVAG+H + G+
Sbjct: 123 ADPRVQIAGNFAPVPEQPVCHSLPVSGTIPDCINGVYLRNGANPLFEPVAGHHFFDGD 180


>GSVIVT01036862001 assembled CDS
          Length = 915

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%)

Query: 21  LVDYLEKLIVKLMFDKSQPLHYLNGNFAPVPEAPPVKDLPVIGHLPECLNGEFVRVGPNP 80
           L D++   I   +     P H L+GNFAPV E PP +   + G LP CL+G ++R GPNP
Sbjct: 120 LDDFINNFIGPPLPPSIDPKHVLSGNFAPVDELPPTECEVIEGSLPPCLDGAYIRNGPNP 179

Query: 81  KFAPVAGYH*WKGN 94
           +F P   +H + G+
Sbjct: 180 QFYPRGPHHLFDGD 193



 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%)

Query: 21  LVDYLEKLIVKLMFDKSQPLHYLNGNFAPVPEAPPVKDLPVIGHLPECLNGEFVRVGPNP 80
           L D +   I   +     P + L+ NFAPV E PP +     G LP  L+G ++R GPNP
Sbjct: 568 LDDVINNFIDPPLRSSVDPRYVLSQNFAPVEELPPTECEVTDGSLPPWLDGAYIRNGPNP 627

Query: 81  KFAPVAGYH*WKGN 94
           +F P   YH + G+
Sbjct: 628 QFLPRGPYHLFDGD 641


>GSVIVT01038080001 assembled CDS
          Length = 474

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query: 37  SQPLHYLNGNFAPVPEAPPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
           + P   + GNFAPVPE P    LPV G +P+C+ G + R G NP   PVAG+H + G+
Sbjct: 95  ADPRVQIAGNFAPVPEQPVHHSLPVDGRIPDCIQGVYTRNGANPLHKPVAGHHLFDGD 152


>GSVIVT01024318001 assembled CDS
          Length = 562

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%)

Query: 38  QPLHYLNGNFAPVPEAPPVKDLPVIGHLPECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
            P H L GNFA V E PP+  L V G LP+ LNG ++R GPNP   P   +H ++G+
Sbjct: 108 DPKHVLTGNFAQVDELPPIDCLVVEGELPQSLNGTYIRNGPNPLHQPRGPHHLFEGD 164


>GSVIVT01029057001 assembled CDS
          Length = 554

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 13  PNKGLTSKLVDYLEKLIVKLMFDKS------QPLHYLNGNFAPVPEAPPVKDLPVIGHLP 66
           P + L +  +D +E  ++  + +K        P   L GNFAPV E P   DL V+G LP
Sbjct: 62  PLQKLAASALDMVECFLIHRLDNKHTLPKPLDPAVQLVGNFAPVRECPVQHDLQVLGQLP 121

Query: 67  ECLNGEFVRVGPNPKFAPVAGYH*WKGN 94
             L G ++R G NP  +P  G+H + G+
Sbjct: 122 PALRGVYLRNGANPMLSPAGGHHLFDGD 149