Jatropha Genome Database

JcCB0498421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0498421.10 - phase: 0 /partial
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019743001 assembled CDS                                        57   2e-09
GSVIVT01032861001 assembled CDS                                        53   2e-08
GSVIVT01023078001 assembled CDS                                        51   1e-07

>GSVIVT01019743001 assembled CDS
          Length = 215

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 29/38 (76%)

Query: 59 IGYKKQTDPCGGVGLLGIAWAFGGMIFILVYCTAGISG 96
          +G KK    C  VG+ GIAWAFGGMIF LVYCTAGISG
Sbjct: 1  MGVKKSPTMCASVGIQGIAWAFGGMIFALVYCTAGISG 38


>GSVIVT01032861001 assembled CDS
          Length = 213

 Score = 53.1 bits (126), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query: 59 IGYKKQTDPCGGVGLLGIAWAFGGMIFILVYCTAGISG 96
          +G  +    C  VG+ GIAWAFGGMIF LVYCTAGISG
Sbjct: 1  MGVVRADSKCSTVGIQGIAWAFGGMIFALVYCTAGISG 38


>GSVIVT01023078001 assembled CDS
          Length = 429

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 14  AKDYVDPPPAPLIDMAEIKLWSFYRALIAEFIATLLFLYITVATVIG 60
           AKDY +PPPA L +  E+    F+R  IAE +AT LFLY+ ++ +IG
Sbjct: 274 AKDYREPPPALLFEPGELHSRPFWRVGIAECMATFLFLYVIISAIIG 320