Jatropha Genome Database

JcCB0496181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0496181.10 - phase: 0 /pseudo
         (255 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016559001 assembled CDS                                       295   1e-80
GSVIVT01024952001 assembled CDS                                       273   8e-74
GSVIVT01024086001 assembled CDS                                       198   2e-51

>GSVIVT01016559001 assembled CDS
          Length = 254

 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 149/218 (68%), Positives = 164/218 (75%), Gaps = 43/218 (19%)

Query: 1   MARKFFVGGNWKCNGTTEDVKKIVSTLNEGQVPSSDVVGRWNALISVSALCFASVNVLLC 60
           M RKFFVGGNWKCNGT E+VKKIVSTLN G+VPS                          
Sbjct: 1   MGRKFFVGGNWKCNGTGEEVKKIVSTLNAGEVPSG------------------------- 35

Query: 61  IVFDIAVTVVNTRDLNLDDLKEVVISPPFVFLPLVKSSLRPDFHVAAQNCWVKKGGAFTG 120
                             D+ EVV+SPPFVFLPLVKS+LRPDFHVAAQNCWVKKGGAFTG
Sbjct: 36  ------------------DVVEVVVSPPFVFLPLVKSTLRPDFHVAAQNCWVKKGGAFTG 77

Query: 121 EVSAEMLVNLAILWVILGHSERRLLLTESNEFVGDKVAYALSQGLKVIACVGETLEQREA 180
           E+SAEMLVNL I WVI+GHSERRLLL ESNEFVG+KVAYALS+GLKVIACVGETLEQRE+
Sbjct: 78  EISAEMLVNLGIPWVIIGHSERRLLLNESNEFVGEKVAYALSKGLKVIACVGETLEQRES 137

Query: 181 GSTLEVVAAQTKAIAARIKNWTDVVLAYEPVWAIGTGE 218
           GST+EVVAAQTKAIA ++ NW +VVLAYEPVWAIGTG+
Sbjct: 138 GSTMEVVAAQTKAIADKVSNWANVVLAYEPVWAIGTGK 175


>GSVIVT01024952001 assembled CDS
          Length = 254

 Score =  273 bits (697), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 137/218 (62%), Positives = 157/218 (72%), Gaps = 43/218 (19%)

Query: 1   MARKFFVGGNWKCNGTTEDVKKIVSTLNEGQVPSSDVVGRWNALISVSALCFASVNVLLC 60
           M RKFF+GGNWKCNGT E+VKKIV                                    
Sbjct: 1   MGRKFFIGGNWKCNGTVEEVKKIV------------------------------------ 24

Query: 61  IVFDIAVTVVNTRDLNLDDLKEVVISPPFVFLPLVKSSLRPDFHVAAQNCWVKKGGAFTG 120
                  TV+N  ++  +D+ EVV+SPPFVFLPLVKS LR DF VAAQNCW+++GGAFTG
Sbjct: 25  -------TVLNEAEVPSEDIVEVVVSPPFVFLPLVKSLLRSDFQVAAQNCWIRRGGAFTG 77

Query: 121 EVSAEMLVNLAILWVILGHSERRLLLTESNEFVGDKVAYALSQGLKVIACVGETLEQREA 180
           E+SAEMLVNL I WVILGHSERR LL ESNEFVGDKVAYALSQGLKVIACVGETLEQRE+
Sbjct: 78  EISAEMLVNLGIPWVILGHSERRSLLAESNEFVGDKVAYALSQGLKVIACVGETLEQRES 137

Query: 181 GSTLEVVAAQTKAIAARIKNWTDVVLAYEPVWAIGTGE 218
           GST+ VVAAQTKAIA ++ +W ++VLAYEPVWAIGTG+
Sbjct: 138 GSTMAVVAAQTKAIAEKVSSWDNIVLAYEPVWAIGTGK 175


>GSVIVT01024086001 assembled CDS
          Length = 256

 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/215 (47%), Positives = 131/215 (60%), Gaps = 45/215 (20%)

Query: 4   KFFVGGNWKCNGTTEDVKKIVSTLNEGQVPSSDVVGRWNALISVSALCFASVNVLLCIVF 63
           KFFVGGNWKCNGT + + K+VS LN  ++  +DV                          
Sbjct: 6   KFFVGGNWKCNGTKDSISKLVSDLNSAKL-EADV-------------------------- 38

Query: 64  DIAVTVVNTRDLNLDDLKEVVISPPFVFLPLVKSSLRPDFHVAAQNCWVKKGGAFTGEVS 123
                             +VV++PPFV+L  VK+SL     ++AQN WV KGGAFTGE+S
Sbjct: 39  ------------------DVVVAPPFVYLDQVKNSLTDRIEISAQNSWVGKGGAFTGEIS 80

Query: 124 AEMLVNLAILWVILGHSERRLLLTESNEFVGDKVAYALSQGLKVIACVGETLEQREAGST 183
            E L ++   WVILGHSERR ++ E ++F+G K AYALSQGLKVIAC+GE L++REAG T
Sbjct: 81  VEQLKDIGCNWVILGHSERRHVIGEDDQFIGKKAAYALSQGLKVIACIGELLQEREAGKT 140

Query: 184 LEVVAAQTKAIAARIKNWTDVVLAYEPVWAIGTGE 218
            +V   Q KA A  + +W DVV+AYEPVWAIGTG+
Sbjct: 141 FDVCFQQMKAFADAVPSWDDVVIAYEPVWAIGTGK 175