Jatropha Genome Database

JcCB0495231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0495231.10 + phase: 0 /partial
         (220 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025299001 assembled CDS                                       261   2e-70
GSVIVT01019769001 assembled CDS                                       107   4e-24
GSVIVT01012131001 assembled CDS                                       102   1e-22
GSVIVT01019770001 assembled CDS                                        76   1e-14

>GSVIVT01025299001 assembled CDS
          Length = 850

 Score =  261 bits (666), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 138/217 (63%), Positives = 165/217 (76%), Gaps = 7/217 (3%)

Query: 10  MDVNGKDDLKAPLLQPPDDVAIAVPKQKDNRDKKVKTIRFKIGDIKCASCAASIESVLGE 69
           M++NGKD+LK PLLQP D V +   +     DKK+KT+ FKIG+I CASCA SIESVL E
Sbjct: 1   MEINGKDELKLPLLQPLDGVVVTASQPSTIIDKKIKTVMFKIGNIACASCATSIESVLLE 60

Query: 70  LSGVEKAMVSPLDGHAAISYIPEFVTAQKIKETIEDAGFPVDEFPEQEISVCRLRIKGMA 129
           L+GVE  MVS L G AA+ YIPE +TA  IKE I+DAGFPVD+ PEQEI+VCRLRIKGMA
Sbjct: 61  LNGVESVMVSVLQGQAAVKYIPELITANAIKEAIKDAGFPVDDLPEQEIAVCRLRIKGMA 120

Query: 130 CTSCSESVERALLMANGVKKAVVGLALEEAKIHFDPNLTDTDHIVEAVEDAGFGAE--II 187
           CTSCSESVE AL + +GVKKAVVGLALEEAK+HFDP++TD +HIVEAVEDAGFGA+    
Sbjct: 121 CTSCSESVEHALSLVDGVKKAVVGLALEEAKVHFDPSITDFNHIVEAVEDAGFGADRNRT 180

Query: 188 SSGN-DLNK-AHLKLEGIKSTEDAAVI--RFSLESYR 220
           S+GN D+ K  +L+L  I  T    +I  RF + SY 
Sbjct: 181 STGNLDVQKPVYLEL-WILCTPVQFIIGRRFYVGSYH 216


>GSVIVT01019769001 assembled CDS
          Length = 1902

 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 5/133 (3%)

Query: 36   QKDNRDKKVKTIRFKIGDIKCASCAASIESVLGELSGVEKAMVSPLDGHAAISYIPEFVT 95
            ++D    + K + F +  + C++CA S+E  +  L G+ +A+V  L+  A + + P FV 
Sbjct: 1240 ERDVEGSEAKAV-FSVIGMTCSACAGSVEKAVKRLPGIREAVVDVLNSRAQVMFYPSFVN 1298

Query: 96   AQKIKETIEDAGFPV----DEFPEQEISVCRLRIKGMACTSCSESVERALLMANGVKKAV 151
             + I+ETIED GF      DE  E+ I VCR+RI GM CTSC+ +VE +L   +GV+KA 
Sbjct: 1299 EETIRETIEDVGFQATLIQDETNEKSIQVCRIRINGMTCTSCTSTVESSLQALHGVQKAQ 1358

Query: 152  VGLALEEAKIHFD 164
            V LA EEA+I  D
Sbjct: 1359 VALATEEARIKVD 1371



 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 5/133 (3%)

Query: 36  QKDNRDKKVKTIRFKIGDIKCASCAASIESVLGELSGVEKAMVSPLDGHAAISYIPEFVT 95
           +KD R  + K +   IG + CA+CA S+E  +  L G+ +A+V  L+    + +   FV 
Sbjct: 562 EKDVRGSEAKAVYSVIG-MTCAACAGSVEKAVKRLPGIREAVVDVLNNRVQVMFYTSFVN 620

Query: 96  AQKIKETIEDAGFPV----DEFPEQEISVCRLRIKGMACTSCSESVERALLMANGVKKAV 151
            + I+ETIED GF      DE  E+   VC++ I GM CTSCS +VE AL    GV+KA 
Sbjct: 621 EETIRETIEDVGFQATLMPDEANEKSTQVCQIHINGMTCTSCSTTVESALQALQGVQKAQ 680

Query: 152 VGLALEEAKIHFD 164
           V LA EEA++  D
Sbjct: 681 VALATEEAQLKVD 693



 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 123  LRIKGMACTSCSESVERALLMANGVKKAVVGLALEEAKIHFDPNLTDTDHIVEAVEDAGF 182
              + GM C++C+ SVE+A+    G+++AVV +    A++ F P+  + + I E +ED GF
Sbjct: 1252 FSVIGMTCSACAGSVEKAVKRLPGIREAVVDVLNSRAQVMFYPSFVNEETIRETIEDVGF 1311

Query: 183  GAEII---SSGNDLNKAHLKLEGIKSTEDAAVIRFSLES 218
             A +I   ++   +    +++ G+  T   + +  SL++
Sbjct: 1312 QATLIQDETNEKSIQVCRIRINGMTCTSCTSTVESSLQA 1350


>GSVIVT01012131001 assembled CDS
          Length = 952

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 99/183 (54%), Gaps = 7/183 (3%)

Query: 44  VKTIRFKIGDIKCASCAASIESVLGELSGVEKAMVSPLDGHAAISYIPEFVTAQKIKETI 103
           ++ I+ ++  + CA+C+ S+E  L +++GV +A V+ L   A + + P+ V  + IK  I
Sbjct: 1   MRGIQVRVTGMTCAACSNSVEGALRDVNGVLRASVALLQNRADVVFDPKLVGEEDIKNAI 60

Query: 104 EDAGFPVDEFPEQEIS------VCRLRIKGMACTSCSESVERALLMANGVKKAVVGLALE 157
           EDAGF  +   E   +      + +  I GM C  C  SVE  L    GVK+AVV LA  
Sbjct: 61  EDAGFDAEIMSEPSRTKPHGTLLGQFTIGGMTCAVCVNSVEGILRKLPGVKRAVVALATS 120

Query: 158 EAKIHFDPNLTDTDHIVEAVEDAGFGAEIISSGNDLNKAHLKLEGIKSTEDAAVIRFSLE 217
             ++ +DP +   D IV A+EDAGF A  + S ++ +K  L + GI +  DA ++   L 
Sbjct: 121 LGEVEYDPTIISKDDIVNAIEDAGFEASFVQS-SEQDKIILGVTGISNEMDALILEGILT 179

Query: 218 SYR 220
           S R
Sbjct: 180 SIR 182



 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%)

Query: 48  RFKIGDIKCASCAASIESVLGELSGVEKAMVSPLDGHAAISYIPEFVTAQKIKETIEDAG 107
           +F IG + CA C  S+E +L +L GV++A+V+       + Y P  ++   I   IEDAG
Sbjct: 85  QFTIGGMTCAVCVNSVEGILRKLPGVKRAVVALATSLGEVEYDPTIISKDDIVNAIEDAG 144

Query: 108 FPVDEFPEQEISVCRLRIKGMACTSCSESVERALLMANGVKKAVVGLALEEAKIHFDPNL 167
           F        E     L + G++    +  +E  L    GV++ +    L E ++ FDP +
Sbjct: 145 FEASFVQSSEQDKIILGVTGISNEMDALILEGILTSIRGVRQFLFDRTLGELEVLFDPEV 204

Query: 168 TDTDHIVEAVE 178
             +  +V+ +E
Sbjct: 205 ISSRSLVDGIE 215


>GSVIVT01019770001 assembled CDS
          Length = 198

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 31/171 (18%)

Query: 32  AVPKQKDNRDKKVKTIRFKIGDIKCASCAASIESVLGELSGVEKAMVSPLDGHAAISYIP 91
            VP++++N +       + +  + C++C+  +E  L +L G++ A+V  L   A +++ P
Sbjct: 17  GVPEKEENAEGSQAKAMYSVTGMTCSACSGQVERALRQLPGIQDAVVDALSNRAQVTFYP 76

Query: 92  EFVTAQKIKETIEDAGFPVDEFPEQEISVCRLRIKGMACTSCSESVERALLMANGVKKAV 151
             +  + I+ETIED G+                              +A L+ +    A 
Sbjct: 77  ALINEETIRETIEDVGY------------------------------QATLIQDHQTNAK 106

Query: 152 VGLALEEAKIHFDPNLTDTDHIVEAVEDAGFGAEIISSGNDLNKAHLKLEG 202
                EEA++H+DP +     ++EA+ED G  A +I++G  ++K  LK++G
Sbjct: 107 STQMYEEAQVHYDPKMVSYKELLEAIEDTGSVAILITTGY-MSKLQLKVDG 156