Jatropha Genome Database

JcCB0495181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0495181.10 - phase: 0 
         (190 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016247001 assembled CDS                                       119   8e-28
GSVIVT01027667001 assembled CDS                                        92   1e-19
GSVIVT01018555001 assembled CDS                                        91   2e-19

>GSVIVT01016247001 assembled CDS
          Length = 679

 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 65/80 (81%)

Query: 93  KSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAG 152
           + V+ +R L +DAV+ A +GH G+P+G A +G+ILY  VM+YNP+NP WFNRDRFVLSAG
Sbjct: 2   RCVDNVRMLIVDAVQTAKAGHSGMPLGMAKVGYILYRHVMRYNPRNPKWFNRDRFVLSAG 61

Query: 153 HGCMLQYALLHLAGYDSVKV 172
           HGC+LQY  LHLAG+ SV++
Sbjct: 62  HGCLLQYICLHLAGFQSVQL 81


>GSVIVT01027667001 assembled CDS
          Length = 526

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/40 (95%), Positives = 40/40 (100%)

Query: 132 MKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVK 171
           MK+NPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSV+
Sbjct: 1   MKFNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVR 40


>GSVIVT01018555001 assembled CDS
          Length = 518

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 38/40 (95%), Positives = 39/40 (97%)

Query: 132 MKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVK 171
           M+YNP NPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVK
Sbjct: 1   MRYNPSNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVK 40