Jatropha Genome Database

JcCB0492781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492781.10 - phase: 0 /partial
         (200 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012140001 assembled CDS                                       349   4e-97
GSVIVT01018124001 assembled CDS                                        64   4e-11

>GSVIVT01012140001 assembled CDS
          Length = 478

 Score =  349 bits (896), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 165/197 (83%), Positives = 181/197 (91%)

Query: 1   MQVMVKGSQGHAGTVPMSLRQDPMAAAAELIVLLESLCKHPKDFLSYDGYCNDSIVESLS 60
           ++V V+GSQGHAGTVPMS+RQDPMAAAAELIVLLESLCK PKDFLSYDG CN   VESLS
Sbjct: 260 LKVTVRGSQGHAGTVPMSMRQDPMAAAAELIVLLESLCKRPKDFLSYDGQCNGFAVESLS 319

Query: 61  SSLVCTVGEISTWPSASNVIPGQVTFTVDLRAMDDMGREAVLYELSNQIYHICDRRSVSC 120
            SLVCTVGEIS+WPSASNVIPGQVTFTVDLRA+DDMGREAVLYELS+++Y IC++RSVSC
Sbjct: 320 GSLVCTVGEISSWPSASNVIPGQVTFTVDLRAIDDMGREAVLYELSDRMYQICEKRSVSC 379

Query: 121 IIERKHDAKAVICDSELSLQLKSAANAALKRMTGEIQDEVPVLMSGAGHDAMAMSHLTKV 180
            IERKHDA AVICD+ELS QLKSA  + LKRM GEIQ +VPVLMSGAGHDAMAMSHLTKV
Sbjct: 380 TIERKHDANAVICDTELSTQLKSATYSTLKRMEGEIQGDVPVLMSGAGHDAMAMSHLTKV 439

Query: 181 GMLFVRCRGGVSHSPAD 197
           GMLFVRCRGG+SHSPA+
Sbjct: 440 GMLFVRCRGGISHSPAE 456


>GSVIVT01018124001 assembled CDS
          Length = 441

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 24/199 (12%)

Query: 1   MQVMVKGSQGHAGTVPMSLRQDPMAAAAELIVLLESLCKHPKDFLSYDGYCNDSIVESLS 60
           ++V  +G+ GHAG V M  R D   AAAEL + +E   KH              ++ES S
Sbjct: 245 IKVDFEGNGGHAGAVLMPNRNDAGLAAAELALAVE---KH--------------VLESGS 287

Query: 61  SSLVCTVGEISTWPSASNVIPGQVTFTVDLRAMDDMGREAVLYELSNQIYHICDRRSVSC 120
              V TVG +   P A N IP +    +D R +++M R  V+ +       I   R V  
Sbjct: 288 IDTVGTVGILELHPGAINSIPSKSHLEIDTRDINEMRRNTVIEKTHQSAITIAKNRGV-- 345

Query: 121 IIERKHDAKAVICDSELSLQLKSAANAALKRMTGEIQDEVPVLMSGAGHDAMAMSHLTKV 180
              R  + K +I     +L  KS   A ++  + E+     +++S A HD++ M+ ++ +
Sbjct: 346 ---RLSEFK-IINQDPPALSDKSITKA-MQAASQELNLSHKLMISRAYHDSLFMARISPM 400

Query: 181 GMLFVRCRGGVSHSPADMC 199
           GM+F+ C  G SH P +  
Sbjct: 401 GMIFIPCYKGYSHKPEEYA 419