Jatropha Genome Database

JcCB0492761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492761.20 - phase: 0 /partial
         (55 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021843001 assembled CDS                                        82   7e-17

>GSVIVT01021843001 assembled CDS
          Length = 552

 Score = 81.6 bits (200), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 46/55 (83%)

Query: 1   DYIDSMEGATLSGRQASAYICDAGEDLVALRKKLAAIESPEIGPSSPVTDELSLV 55
           DYIDSMEGATLSGRQ SAYICDAGE+L AL+KKL A++S E   ++  TDELSLV
Sbjct: 498 DYIDSMEGATLSGRQTSAYICDAGEELAALQKKLGALDSQEFTNAANTTDELSLV 552