Jatropha Genome Database

JcCB0492351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0492351.10 + phase: 1 /pseudo/partial
         (238 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034903001 assembled CDS                                       464   e-131
GSVIVT01011565001 assembled CDS                                        47   7e-06

>GSVIVT01034903001 assembled CDS
          Length = 438

 Score =  464 bits (1193), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 216/233 (92%), Positives = 226/233 (96%)

Query: 1   WFARLWEIEKDQYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSVFKAARMYRM 60
           WFARLWEIEKD+YWGYITNCGTEGNLHGILVGREVLPDGILYAS+E+HYSVFKAARMYRM
Sbjct: 109 WFARLWEIEKDEYWGYITNCGTEGNLHGILVGREVLPDGILYASQETHYSVFKAARMYRM 168

Query: 61  GCVKIDCLVSGEIDCADFKVKLLANKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFT 120
            CVK+   +SGEIDCADFK KLLANKDKPAIINVNIGTTVKGAVDDLDLVI+TLEE GFT
Sbjct: 169 ECVKVATSLSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIETLEECGFT 228

Query: 121 HDRFYIHCDGALFGLMMPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQLTRLEHIN 180
           HDRFYIHCDGALFGLMMPFVKRAPKV+FKKPIGSVSVSGHKFVGCPMPCGVQ+TR+EHIN
Sbjct: 229 HDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHIN 288

Query: 181 VLSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHY 233
            LSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGY+GFQKEVQKCLRNAHY
Sbjct: 289 ALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHY 341


>GSVIVT01011565001 assembled CDS
          Length = 462

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 12/145 (8%)

Query: 96  IGTTVKGAVDDL----DLVIQTLEESGFTHDRFYIHCDGALFGLMMPFVKRAPKVSFKKP 151
           +G+T+ G  +D+    DL+++  +++G+      IH D A  G + PF+    +  F+ P
Sbjct: 210 LGSTLNGEFEDVKLLNDLLVEKNKQTGWDTP---IHVDAASGGFIAPFLYPELEWDFRLP 266

Query: 152 -IGSVSVSGHKF--VGCPMPCGVQLTRLEHINVLSRNVEYLASRDA--TIMGSRNGHAPI 206
            + S++VSGHK+  V   +   V  ++ +    L  ++ YL +     T+  S+     I
Sbjct: 267 LVKSINVSGHKYGLVYAGIGWVVWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVI 326

Query: 207 FLWYTLNRKGYRGFQKEVQKCLRNA 231
             +Y L R G+ G++  ++ C  NA
Sbjct: 327 AQYYQLIRLGFEGYRNVMENCQENA 351