Jatropha Genome Database

JcCB0489751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0489751.10 + phase: 2 /partial
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035957001 assembled CDS                                        94   6e-20
GSVIVT01003875001 assembled CDS                                        87   5e-18
GSVIVT01007958001 assembled CDS                                        82   3e-16
GSVIVT01022808001 assembled CDS                                        77   1e-14

>GSVIVT01035957001 assembled CDS
          Length = 1642

 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 65/92 (70%), Gaps = 5/92 (5%)

Query: 175 KGR-LSRTISSRSNQTKK--LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELEN 231
           KGR LSR       Q KK  LKP HWLKLTRA+QGSLWAE Q+  EASKAPE D+SELE+
Sbjct: 668 KGRGLSRAGPKIQAQPKKASLKPYHWLKLTRAMQGSLWAETQRPEEASKAPEFDMSELES 727

Query: 232 LFSASVPNSDHGRKSRIHSSR--GRKAEKVQL 261
           LFS +VPNS++G      + R  G K+EKVQL
Sbjct: 728 LFSTAVPNSENGGVGGKSNRRASGPKSEKVQL 759


>GSVIVT01003875001 assembled CDS
          Length = 947

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 51/65 (78%), Gaps = 3/65 (4%)

Query: 200 LTRAVQGSLWAEAQKSGEASKAPEIDLSELENLFSASVPNSDHGR---KSRIHSSRGRKA 256
           LTRAV GSLWAE QKSGEASKAPEID+SELE+LFSA+ P SDHG    KS + +  G K 
Sbjct: 598 LTRAVSGSLWAETQKSGEASKAPEIDMSELESLFSAAAPKSDHGNSSGKSNLRAPAGSKF 657

Query: 257 EKVQL 261
           +KVQL
Sbjct: 658 DKVQL 662


>GSVIVT01007958001 assembled CDS
          Length = 1010

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 3/73 (4%)

Query: 192 LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELENLFSASVPNSDH---GRKSRI 248
           LKPLHW K+TRA+QGSLW E Q+ GE   APE D+SELE LFSA+VPNS +   G+    
Sbjct: 606 LKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPNSANSLGGKSGGR 665

Query: 249 HSSRGRKAEKVQL 261
             S G KA++V L
Sbjct: 666 RKSVGSKADRVNL 678


>GSVIVT01022808001 assembled CDS
          Length = 1082

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 52/73 (71%), Gaps = 4/73 (5%)

Query: 192 LKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDLSELENLFSASVPNSDHGRKSRIHSS 251
           L+PLHW+K+TRAVQGSLWA++QK    S+APEID+SELE+LFSA V  SD     +    
Sbjct: 663 LRPLHWVKVTRAVQGSLWADSQKQENQSRAPEIDISELESLFSA-VSTSDGKGTEKGGGR 721

Query: 252 RG---RKAEKVQL 261
           RG    K EKVQL
Sbjct: 722 RGSNINKPEKVQL 734