Jatropha Genome Database

JcCB0487491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0487491.10 + phase: 0 
         (202 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031017001 assembled CDS                                       155   1e-38
GSVIVT01011870001 assembled CDS                                       138   2e-33

>GSVIVT01031017001 assembled CDS
          Length = 365

 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 86/107 (80%), Gaps = 5/107 (4%)

Query: 81  IGTHESGPSFLDHGNAGFRSSLSLKSWILDNPILVLGDRVFEKWGGDLPFLLKVLSVEKA 140
           +GTHESGPSFL     G   S +LKSWI +NP  VLGD V EKWG DLPFL KVLSV KA
Sbjct: 1   MGTHESGPSFL----IGEGKSRTLKSWISENPN-VLGDEVVEKWGSDLPFLFKVLSVAKA 55

Query: 141 LSIQAHPDKELARALHISQPNVYKDGNHKPEMALALTEFEALCGFIS 187
           LSIQAHPDKELAR LH  QP+VYKD NHKPEMALA+TEF+ALCGF+S
Sbjct: 56  LSIQAHPDKELARTLHKLQPHVYKDDNHKPEMALAITEFQALCGFVS 102


>GSVIVT01011870001 assembled CDS
          Length = 400

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 80/107 (74%), Gaps = 2/107 (1%)

Query: 83  THESGPSFLDHGNAGFRSSLSLKSWILDNPILVLGDRVFEKWGGDLPFLLKVLSVEKALS 142
           THESGP+F++        +L+LKSWI  NP  VLG+ V  KWG DLPFL KVLSV KALS
Sbjct: 35  THESGPTFVNESREC-GEALTLKSWISRNPN-VLGNEVLNKWGCDLPFLFKVLSVGKALS 92

Query: 143 IQAHPDKELARALHISQPNVYKDGNHKPEMALALTEFEALCGFISTK 189
            QAHPDKELA  LH  QPN+Y +GNHKPEMALALTEFEAL GFI  K
Sbjct: 93  RQAHPDKELAETLHELQPNIYMNGNHKPEMALALTEFEALHGFIGLK 139