Jatropha Genome Database

JcCB0487041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0487041.10 - phase: 0 /pseudo
         (128 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015253001 assembled CDS                                       100   2e-22

>GSVIVT01015253001 assembled CDS
          Length = 196

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 72/110 (65%), Gaps = 2/110 (1%)

Query: 1   MKKLARNWRKSHEEKXXXXXXXXXXXXXXXXXXXEEQEELVRSLERTQAEQSLFWRRVFA 60
           MKKLAR  R++  E                    +EQEELVRSLER+QA+QSL WR VF+
Sbjct: 1   MKKLARKLRRNSRE-FDDENFSLPTLDDSRPIDSQEQEELVRSLERSQAQQSLLWRSVFS 59

Query: 61  GFLFSYAVFQLYSIYQMATSPWELRYQAYFMEDMESWMVISAG-LPLLAC 109
            FLF +A F +YSI+Q  +SPWELRY AYFME+++S M+I A  + +LAC
Sbjct: 60  VFLFCFAAFLVYSIFQQVSSPWELRYHAYFMEEIDSSMIIFADWVAVLAC 109