Jatropha Genome Database

JcCB0481531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0481531.10 - phase: 0 
         (117 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014167001 assembled CDS                                       166   2e-42

>GSVIVT01014167001 assembled CDS
          Length = 514

 Score =  166 bits (420), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 93/109 (85%), Gaps = 1/109 (0%)

Query: 1   MWNYLWIPILISLSKELSLAKAAHSNILLPSQIDDESSSPVPRCPAPDPKLNYRPVIGIL 60
           +WNYLW+P+L+S+SKEL+ AKA  S ILLPS +   S+   P CPAPDPKLN+RPV+GIL
Sbjct: 174 IWNYLWVPLLLSVSKELTAAKA-ESTILLPSDVRLGSARSSPSCPAPDPKLNFRPVVGIL 232

Query: 61  SHPGDGASRRLNNATNASYIAASYVKFVESAGARVIPLIYNEPPEVLFE 109
           +HPGDGAS RLNN TNASYIAASYVKFVESAGARVIPLIYNEP E+L E
Sbjct: 233 THPGDGASGRLNNDTNASYIAASYVKFVESAGARVIPLIYNEPLEILHE 281