Jatropha Genome Database

JcCB0480731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0480731.10 - phase: 0 /partial
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032992001 assembled CDS                                       199   2e-52
GSVIVT01008625001 assembled CDS                                       103   1e-23

>GSVIVT01032992001 assembled CDS
          Length = 478

 Score =  199 bits (507), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/100 (97%), Positives = 98/100 (98%)

Query: 1   KYAKHVGLKRDFRLVVRGAARNMVTILNGSTDEVLIIKSVTHRDFNAMIKSIPNPVYLFQ 60
           KYAK+VGLKRDFRLVVRGAARNMVTILNGS DEVLIIKSVTHRDFNAMIKSI NPVYLFQ
Sbjct: 221 KYAKYVGLKRDFRLVVRGAARNMVTILNGSDDEVLIIKSVTHRDFNAMIKSIQNPVYLFQ 280

Query: 61  GIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 100
           GIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW
Sbjct: 281 GIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 320


>GSVIVT01008625001 assembled CDS
          Length = 439

 Score =  103 bits (258), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 4/103 (3%)

Query: 2   YAKHVGLKRDFRLVVRGAARNM--VTILNGSTDEVLIIKSVTHRDFNAMIKSIP--NPVY 57
           Y  +VG K  FRL+ RG+A+ +  V  L+ +  E LIIK+  H   N MI+ +P  NPVY
Sbjct: 210 YTAYVGKKSTFRLLNRGSAKALDKVVELDETRKEALIIKTTVHDIMNKMIQEVPIHNPVY 269

Query: 58  LFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEW 100
           L  G      AKGTG+K++E ALS+C+ VD+YGFTVDPGY EW
Sbjct: 270 LMLGASFGSAAKGTGLKALEFALSICESVDMYGFTVDPGYKEW 312