Jatropha Genome Database

JcCB0480341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0480341.10 - phase: 0 /partial
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024167001 assembled CDS                                        96   2e-21

>GSVIVT01024167001 assembled CDS
          Length = 455

 Score = 96.3 bits (238), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 60/83 (72%), Gaps = 3/83 (3%)

Query: 1  MPALACCVDAALAPPGYANHAGDSSLQSSILFSGVXXXXXXXXXXXIDNSPFSHWSPSLS 60
          MPALACCVDAA+APPGYA  AGDSSL + + F+G            +     SHWSPSLS
Sbjct: 1  MPALACCVDAAVAPPGYA-FAGDSSLPAPVPFAG--DPLATNDAAALPTGEHSHWSPSLS 57

Query: 61 AALYKIDGWGAPYFSVNSSGNIA 83
          A LY+IDGWGAPYFSVN+SGNI+
Sbjct: 58 ADLYRIDGWGAPYFSVNTSGNIS 80