Jatropha Genome Database

JcCB0477181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0477181.10 + phase: 0 /partial
         (126 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010321001 assembled CDS                                       207   1e-54
GSVIVT01001846001 assembled CDS                                       180   1e-46
GSVIVT01011683001 assembled CDS                                        84   2e-17

>GSVIVT01010321001 assembled CDS
          Length = 400

 Score =  207 bits (527), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/123 (78%), Positives = 107/123 (86%)

Query: 1   NEKITDDILLQLTNRAQGNLQCLSLIECPRITDDGLKHVLENNPRLTKLSVPGCTRLSIE 60
           NE+ITDDILLQLT RAQGNLQ L L+ECPRITDDGLK VLE+NPRLTKL VPGCTRLSIE
Sbjct: 186 NERITDDILLQLTRRAQGNLQGLHLVECPRITDDGLKRVLESNPRLTKLCVPGCTRLSIE 245

Query: 61  GIVTSLKAFRSMGTQGVKHLRIGGLYGVTQKHFEELKFLLGSDNHMQQNTYKPHYYHRGN 120
           G+V  L+AF+S GT G+KHLRIGGLYGV  KHFEELK LLG D H Q+N +KPH+Y+RGN
Sbjct: 246 GVVNMLRAFQSTGTPGIKHLRIGGLYGVAHKHFEELKLLLGIDIHEQKNAHKPHFYNRGN 305

Query: 121 FYL 123
           FYL
Sbjct: 306 FYL 308


>GSVIVT01001846001 assembled CDS
          Length = 489

 Score =  180 bits (457), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 102/126 (80%)

Query: 1   NEKITDDILLQLTNRAQGNLQCLSLIECPRITDDGLKHVLENNPRLTKLSVPGCTRLSIE 60
           ++KITDD LLQLT RAQG+LQ LSL++CPRITD GLK VLENNPRLTKL VPGC RLS++
Sbjct: 247 SDKITDDALLQLTGRAQGSLQGLSLVQCPRITDSGLKRVLENNPRLTKLCVPGCVRLSVD 306

Query: 61  GIVTSLKAFRSMGTQGVKHLRIGGLYGVTQKHFEELKFLLGSDNHMQQNTYKPHYYHRGN 120
            I+ +LKAF+S GT G+KHLRI GL GVT +HFEELK LLG DNH Q  T+KP +YH   
Sbjct: 307 CILLNLKAFKSAGTLGIKHLRISGLNGVTDQHFEELKLLLGVDNHKQLRTHKPRFYHGEQ 366

Query: 121 FYLSCE 126
            YLSC+
Sbjct: 367 LYLSCD 372


>GSVIVT01011683001 assembled CDS
          Length = 237

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 1   NEKITDDILLQLTNRAQGNLQCLSLIECPRITDDGLKHVLENNPRLTKLSVPGCTRLSIE 60
           N   +D+I+++LT++A G L+ L+L+ C +ITDDGL+ V+E NP + +L +P CT L+ E
Sbjct: 92  NMLFSDEIMIKLTSKANGRLRTLALMSCTKITDDGLQQVIEKNPLINRLYLPACTGLTPE 151

Query: 61  GIVTSLKAFRSMGTQGVKHLRIGGLYGVTQKHFEEL 96
           GI+ ++K   +   Q +K +RI G+Y + ++H E L
Sbjct: 152 GIMRAVKTL-TEHYQALKCVRINGVYNMKKEHLETL 186