Jatropha Genome Database

JcCB0477071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0477071.10 + phase: 1 /partial
         (231 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035963001 assembled CDS                                       306   4e-84
GSVIVT01020543001 assembled CDS                                        88   4e-18

>GSVIVT01035963001 assembled CDS
          Length = 1220

 Score =  306 bits (785), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 177/229 (77%), Gaps = 5/229 (2%)

Query: 7   DSRF---STQGRLEMLDTH-GENCGLVKNLAITGLVSTEILEPLIDILFDCGMDKLVDDT 62
           D+R+   S  G++  L T  GENCGLVKNLAITGLVSTE+L+PL+D LFDCGM+KLVDDT
Sbjct: 560 DARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDT 619

Query: 63  HTKLDEKYKVFLNGEWVGVCEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADA 122
            TKL  K KVFL+G+WVGVCED   FV E            QVEIKRDEQQ EVRIF+DA
Sbjct: 620 STKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDA 679

Query: 123 GRILRPLLVVENLHKIKAFKGGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAGVD 182
           GRILRPLLVVENL K+K FKG ++TFQSLLDK            DCSTAWGIK+L+ G D
Sbjct: 680 GRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHD 739

Query: 183 KKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
              P+KYTHCELDMSFLLGLSCGIIP+ANHDHARRVLYQ++KHSQQAIG
Sbjct: 740 DP-PVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIG 787


>GSVIVT01020543001 assembled CDS
          Length = 1193

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 21/226 (9%)

Query: 23  GENCGLVKNLAITGLVST-EILEPLIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGV 81
           G+ CGLVKNLA+   ++      P+++ L +   +   + +   + +  K+F+NG WVG+
Sbjct: 522 GQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGI 581

Query: 82  CEDSNLFVAEXXXXXXXXXXXXQVEIKRDEQQKEVRIFADAGRILRPLLVVENL------ 135
             + +L V              +V + RD + KE+R++ D GR  RPL +VE        
Sbjct: 582 HRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKK 641

Query: 136 HKIKAFK-------GGNYTFQSLLDKXXXXXXXXXXXXDCSTAWGIKFLVAG---VDKKQ 185
             I+A +       GG   +  L+ K                +  I  L++     ++  
Sbjct: 642 RDIRALQLRESPEDGG---WHDLVSKGFIEYVDTEEEETTMISMTINDLISARLNPEEAY 698

Query: 186 PLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIG 231
              YTHCE+  S +LG+   IIPF +H+ + R  YQ+    +QA+G
Sbjct: 699 SETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMG 743