Jatropha Genome Database

JcCB0476701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0476701.10 + phase: 0 /partial
         (159 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008609001 assembled CDS                                       200   2e-52
GSVIVT01036478001 assembled CDS                                        47   5e-06

>GSVIVT01008609001 assembled CDS
          Length = 417

 Score =  200 bits (509), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/158 (64%), Positives = 117/158 (74%), Gaps = 25/158 (15%)

Query: 1   AIDDAGHDKASVFKVKGLEAVDQAIGQLAKLLWQAESTGKFQYFLCVTGDHSTPVEYGDH 60
           AIDDAGHDKAS+FKVK +EAVD+AIGQLA+LLWQAESTGKF+Y+LCVTGDHSTPVEYGDH
Sbjct: 284 AIDDAGHDKASIFKVKAMEAVDRAIGQLARLLWQAESTGKFEYYLCVTGDHSTPVEYGDH 343

Query: 61  SFEPVPFAMSPLQDFVAAVGGESIVMATSLESFPLPTVKAGEDLKDTKTEKERASKQLKA 120
           SFEPVPFA+  L+DFV A+                       DL +   + E  SKQ  A
Sbjct: 344 SFEPVPFAICQLKDFVDAM-----------------------DLTEGLEKMEERSKQ--A 378

Query: 121 FSGDSVCEFSEIAAARGCLGRFPGGEMMGVIKAFLSLK 158
           F+GDSV EF+EIAAARGCLGRF G EMMG+IK +L LK
Sbjct: 379 FNGDSVSEFTEIAAARGCLGRFSGSEMMGIIKTYLKLK 416


>GSVIVT01036478001 assembled CDS
          Length = 70

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 24/27 (88%)

Query: 5  AGHDKASVFKVKGLEAVDQAIGQLAKL 31
          AGHDKAS+FKVK +EAVD AIGQL+ L
Sbjct: 16 AGHDKASIFKVKAMEAVDTAIGQLSHL 42