Jatropha Genome Database

JcCB0474591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0474591.10 - phase: 0 /partial
         (89 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019608001 assembled CDS                                       162   2e-41

>GSVIVT01019608001 assembled CDS
          Length = 724

 Score =  162 bits (411), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/76 (94%), Positives = 73/76 (96%)

Query: 13  QLDEVDMGMTYEELSVYGRLRKIFRCGPVSMFKNLCYKWGSTLTPSEVAEKVKHFFKYYS 72
           QLDEVDMGMTYEELSVYGRLRKIF CGPVSMFKNLCYKWG  LTPSEVAEKVKHFFKYYS
Sbjct: 585 QLDEVDMGMTYEELSVYGRLRKIFHCGPVSMFKNLCYKWGGRLTPSEVAEKVKHFFKYYS 644

Query: 73  INRHKMTVLTPSYHAE 88
           INRHKMTVLTP+YHAE
Sbjct: 645 INRHKMTVLTPAYHAE 660