Jatropha Genome Database

JcCB0473701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0473701.10 + phase: 1 /partial
         (63 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029062001 assembled CDS                                       109   2e-25
GSVIVT01028557001 assembled CDS                                        82   5e-17

>GSVIVT01029062001 assembled CDS
          Length = 461

 Score =  109 bits (273), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 55/62 (88%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDGCDELCNARKAETDKLLSK 60
           ARCV TLLHEMKRRG+DCRFGVVSMCIGTGMGAAAVFERGD  DEL NAR AE + LLSK
Sbjct: 399 ARCVGTLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDCVDELRNARTAENNNLLSK 458

Query: 61  DA 62
           DA
Sbjct: 459 DA 460


>GSVIVT01028557001 assembled CDS
          Length = 443

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 41/41 (100%)

Query: 1   ARCVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGD 41
           ARCV+TLL+EMKRRG+DCR+GV+SMCIG+GMGAAAVFERGD
Sbjct: 401 ARCVSTLLYEMKRRGKDCRYGVISMCIGSGMGAAAVFERGD 441