Jatropha Genome Database

JcCB0473001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0473001.10 + phase: 1 /partial
         (92 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001347001 assembled CDS                                        97   1e-21
GSVIVT01025420001 assembled CDS                                        97   2e-21
GSVIVT01032569001 assembled CDS                                        84   1e-17
GSVIVT01020128001 assembled CDS                                        83   2e-17
GSVIVT01034357001 assembled CDS                                        77   1e-15
GSVIVT01037734001 assembled CDS                                        76   4e-15
GSVIVT01024867001 assembled CDS                                        61   1e-10
GSVIVT01019425001 assembled CDS                                        58   1e-09
GSVIVT01016462001 assembled CDS                                        57   2e-09
GSVIVT01027800001 assembled CDS                                        56   3e-09
GSVIVT01029844001 assembled CDS                                        55   7e-09
GSVIVT01031180001 assembled CDS                                        50   2e-07
GSVIVT01037591001 assembled CDS                                        49   6e-07
GSVIVT01034615001 assembled CDS                                        49   7e-07
GSVIVT01011026001 assembled CDS                                        47   2e-06

>GSVIVT01001347001 assembled CDS
          Length = 311

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 21 VRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGGK 67
          VR LC+KAKEILM+ESNVQPVKSPVTICGDIHGQFHDLAELFRIGGK
Sbjct: 30 VRTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGK 76


>GSVIVT01025420001 assembled CDS
          Length = 314

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/47 (93%), Positives = 46/47 (97%)

Query: 21 VRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGGK 67
          VR LC+KAKEILM+ESNVQPVKSPVTICGDIHGQFHDLAELFRIGGK
Sbjct: 33 VRMLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGK 79


>GSVIVT01032569001 assembled CDS
          Length = 306

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/47 (74%), Positives = 42/47 (89%)

Query: 21 VRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGGK 67
          VRALC++A+ +L++E NVQ VK PVT+CGDIHGQFHDL ELFRIGGK
Sbjct: 25 VRALCEQARAVLVEEWNVQSVKCPVTVCGDIHGQFHDLVELFRIGGK 71


>GSVIVT01020128001 assembled CDS
          Length = 306

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/48 (72%), Positives = 42/48 (87%)

Query: 19 SVVRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGG 66
          S V+ LCD+A+ IL++E NVQPVK PVT+CGDIHGQF+DL ELFRIGG
Sbjct: 23 SEVKTLCDQARTILVEEYNVQPVKCPVTVCGDIHGQFYDLIELFRIGG 70


>GSVIVT01034357001 assembled CDS
          Length = 303

 Score = 77.0 bits (188), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 41/48 (85%)

Query: 21 VRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKV 68
          ++ LC+  KEIL++ESNVQPV SPVT+CGDIHGQFHDL +LF+ GG V
Sbjct: 21 LQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHV 68


>GSVIVT01037734001 assembled CDS
          Length = 305

 Score = 75.9 bits (185), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 42/48 (87%)

Query: 19 SVVRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGG 66
          S V+ALC KA EIL++ESNVQ V +PVTICGDIHGQF+D+ ELF++GG
Sbjct: 20 SEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGG 67


>GSVIVT01024867001 assembled CDS
          Length = 301

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 17 MNSVVRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGG 66
          M S +R LC  ++EI +Q+ N+  +++P+ ICGDIHGQ+ DL  LF  GG
Sbjct: 31 MESEIRQLCTVSREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFDYGG 80


>GSVIVT01019425001 assembled CDS
          Length = 319

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 21 VRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGG 66
          +R LC  +KEI + + N+  +++P+ ICGD+HGQF DL  LF  GG
Sbjct: 32 IRMLCVTSKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGG 77


>GSVIVT01016462001 assembled CDS
          Length = 308

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 34/46 (73%)

Query: 21 VRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGG 66
          ++ LC  ++EI +Q+SN+  +++P+ ICGDIHGQ+ DL  LF  GG
Sbjct: 32 IKQLCVASREIFLQQSNLLELEAPIKICGDIHGQYSDLLRLFEYGG 77


>GSVIVT01027800001 assembled CDS
          Length = 326

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 21 VRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGG 66
          +R LC  +K+I +++ N+  +++PV ICGDIHGQ+ DL  LF  GG
Sbjct: 31 IRQLCVASKDIFLRQPNLLELQAPVKICGDIHGQYSDLLRLFDYGG 76


>GSVIVT01029844001 assembled CDS
          Length = 274

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%)

Query: 19 SVVRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGG 66
          S +R LC  AK++ + + N+  +++P+ +CGDIHGQ+ DL  LF  GG
Sbjct: 4  SEIRQLCITAKDVFLSQPNLLELEAPINVCGDIHGQYSDLLRLFEYGG 51


>GSVIVT01031180001 assembled CDS
          Length = 322

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 21 VRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELFRIGG 66
          +R LC  A+ + + + N+  + +P+ I GDIHGQ+ DL  LF  GG
Sbjct: 33 IRHLCVNARHVFLSQPNLLQLHAPIRIAGDIHGQYQDLLRLFEYGG 78


>GSVIVT01037591001 assembled CDS
          Length = 1049

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 26/39 (66%)

Query: 24  LCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELF 62
           LCD A+ I   E +V  +K+PV I GD+HGQF DL  LF
Sbjct: 726 LCDSAERIFSSEPSVLQIKAPVKIFGDLHGQFGDLMRLF 764


>GSVIVT01034615001 assembled CDS
          Length = 928

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 26/39 (66%)

Query: 24  LCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELF 62
           LCD A+ I   E +V  VK+PV I GD+HGQF DL  LF
Sbjct: 606 LCDTAEHIFSNEPSVLVVKAPVKIFGDLHGQFGDLMRLF 644


>GSVIVT01011026001 assembled CDS
          Length = 888

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 21  VRALCDKAKEILMQESNVQPVKSPVTICGDIHGQFHDLAELF 62
           V  LC  A++I M E  V  +K+P+ + GD+HGQF DL  LF
Sbjct: 562 VGELCYAAEQIFMHEPTVLQLKAPIKVFGDLHGQFGDLMRLF 603