Jatropha Genome Database

JcCB0471851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0471851.10 + phase: 0 /partial
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011569001 assembled CDS                                       103   5e-23

>GSVIVT01011569001 assembled CDS
          Length = 283

 Score =  103 bits (256), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 98/152 (64%), Gaps = 18/152 (11%)

Query: 17  TGYLEDALLEFSERSKRRRLLLYTGDHHQIKKSNDHLAKSYCNANYD--WEMSENFSCMS 74
           TGYL+DAL+EFS+RSKRRRLLLYT   H+    ND L K+Y N N +  W++SENF+CM+
Sbjct: 56  TGYLQDALVEFSDRSKRRRLLLYT--DHETNSPND-LMKTYWNMNPNCTWDLSENFNCMN 112

Query: 75  YITSSINGVSDGPISTSISD--ISEEANAITEMKTPEEELISASHETLDSSSSPYKD-SA 131
            I +SI GVS  PI+ S     ISEE     +MKTPEE +  ++ E LDSSSS YK+ S 
Sbjct: 113 QI-ASIGGVSAEPINGSAMSGMISEEEPTFADMKTPEETV--SALEALDSSSSSYKEYSV 169

Query: 132 KTKSIFDKENQFQSD-------DEEKRKKRVI 156
            TKS+ +K+     D        + K+KK++I
Sbjct: 170 NTKSVSEKDTLCSIDPLPPSTGGDHKKKKKLI 201