Jatropha Genome Database

JcCB0471671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0471671.10 + phase: 0 
         (316 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027210001 assembled CDS                                       182   2e-46
GSVIVT01037441001 assembled CDS                                       182   2e-46
GSVIVT01029937001 assembled CDS                                       179   1e-45
GSVIVT01008935001 assembled CDS                                       165   3e-41
GSVIVT01015504001 assembled CDS                                       157   7e-39

>GSVIVT01027210001 assembled CDS
          Length = 289

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/231 (40%), Positives = 145/231 (62%), Gaps = 23/231 (9%)

Query: 65  KLIKKESLSHDVRLFRFALPSEDQVLGLPVGKHIYLCATIEDKLC--MRAYTPTSTIEAV 122
           KL++K  +SH+V  FRFALP+   V GLPVG+HI +C   +D+    +R YTP +    V
Sbjct: 59  KLVQKTRISHNVGRFRFALPTPTSVFGLPVGQHI-ICRGKDDQGAEVIRPYTPITLDSDV 117

Query: 123 GYFDLVIKIYFKGVHPKFPNGGLMSQYLNSLQLGASIDVKGPLGHIEYVGRGKFMVHGKP 182
           G+++LV+K+Y KG          MS +   ++ G ++ VKGP G + Y          KP
Sbjct: 118 GFYELVVKMYPKGQ---------MSHHFRKMREGDTLAVKGPRGRLIY----------KP 158

Query: 183 KSAKKLTMLAGGTGITPIYQVVQAILKDPEDDTEMYVVYANRTEDDILLREELDSWAKEY 242
             AK   MLAGGTGITP++Q+ +AIL++P+D T ++++YAN + DDILL++ELD +A+++
Sbjct: 159 GQAKAFGMLAGGTGITPMFQLTRAILENPKDKTNVHLIYANISYDDILLKDELDGFARKF 218

Query: 243 SDRLKVWYVVQESIKEGWQYSVGFITESILREHVPEGSDDTLALACGPPPM 293
            +R KV+YV+ +   E W   +G I++ ++ +H P  + D   L CGPP M
Sbjct: 219 PNRFKVFYVLSQP-PEAWNGGIGHISKEMIEKHCPAPAPDIQILRCGPPGM 268


>GSVIVT01037441001 assembled CDS
          Length = 278

 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/256 (39%), Positives = 152/256 (59%), Gaps = 26/256 (10%)

Query: 55  ALIPREKISCKLIKKESLSHDVRLFRFALPSEDQVLGLPVGKHIYLCATIEDKL---CMR 111
            L P      KLIK+  LSH+V  F FALP+   VLGLP+G+H  +    +D L    ++
Sbjct: 38  CLDPENFKEFKLIKRTQLSHNVAKFIFALPTPTSVLGLPIGQH--MSCKGKDSLGEDVVK 95

Query: 112 AYTPTSTIEAVGYFDLVIKIYFKGVHPKFPNGGLMSQYLNSLQLGASIDVKGPLGHIEYV 171
            YTPT+    +GYF+LVIK+Y +G          MS +   +  G  + VKGP G  +Y 
Sbjct: 96  PYTPTTLDSDLGYFELVIKMYPQG---------RMSHHFREMCEGDYLAVKGPKGRFKY- 145

Query: 172 GRGKFMVHGKPKSAKKLTMLAGGTGITPIYQVVQAILKDPEDDTEMYVVYANRTEDDILL 231
                    +P       MLAGGTGITP++QV +AIL++P D+T+++++YAN T +DILL
Sbjct: 146 ---------QPGQVIAFGMLAGGTGITPMFQVTRAILENPSDNTKVHLIYANVTYEDILL 196

Query: 232 REELDSWAKEYSDRLKVWYVVQESIKEGWQYSVGFITESILREHVPEGSDDTLALACGPP 291
           +EELD++A  + +R  V+YV+ +   EGW   VGF+++ +++ H P  + +   L CGPP
Sbjct: 197 KEELDNFAANFPNRFTVYYVLNQP-PEGWNGGVGFVSKEMIQTHCPPPATNIQILRCGPP 255

Query: 292 PMIQFAVQPNLEKMNY 307
           PM + A+  +LE + Y
Sbjct: 256 PMNK-AMAGHLEALGY 270


>GSVIVT01029937001 assembled CDS
          Length = 277

 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/241 (40%), Positives = 143/241 (59%), Gaps = 23/241 (9%)

Query: 55  ALIPREKISCKLIKKESLSHDVRLFRFALPSEDQVLGLPVGKHIYLCATI-EDKLCMRAY 113
            L P      KL+K+  LSH+V  FRF LP+   VLGLP+G+HI       E +  ++ Y
Sbjct: 37  CLDPENFKQFKLVKRTQLSHNVAKFRFDLPTPTSVLGLPIGQHISCKGKDGEGQEIIKPY 96

Query: 114 TPTSTIEAVGYFDLVIKIYFKGVHPKFPNGGLMSQYLNSLQLGASIDVKGPLGHIEY-VG 172
           TPT+    VGYF+LVIK+Y +G          MS +   +++G  + VKGP G   Y VG
Sbjct: 97  TPTTLDSDVGYFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGPKGRFRYQVG 147

Query: 173 RGKFMVHGKPKSAKKLTMLAGGTGITPIYQVVQAILKDPEDDTEMYVVYANRTEDDILLR 232
           +            +   MLAGG+GITP++QV +AIL++P+D T+++++YAN T +DILL+
Sbjct: 148 Q-----------VRAFGMLAGGSGITPMFQVARAILENPKDKTKVHLIYANVTFEDILLK 196

Query: 233 EELDSWAKEYSDRLKVWYVVQESIKEGWQYSVGFITESILREHVPEGSDDTLALACGPPP 292
           EEL+  +  Y D  KV+YV+ +   E W   VGF+++ +++ H P  + D   L CGPPP
Sbjct: 197 EELEGLSASYPDHFKVYYVLNQP-PEAWNGGVGFVSKEMIKAHCPAPASDIKILRCGPPP 255

Query: 293 M 293
           M
Sbjct: 256 M 256


>GSVIVT01008935001 assembled CDS
          Length = 664

 Score =  165 bits (417), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 94/115 (81%), Gaps = 16/115 (13%)

Query: 202 QVVQAILKDPEDDTEMYVVYANRTEDDILLREELDSWAKEYSDRLKVWYVVQESIKEGWQ 261
           Q++QA+LKDPEDDTEMYVVYANRTEDDILL EELD+WA+++ +RLKV             
Sbjct: 566 QIIQAVLKDPEDDTEMYVVYANRTEDDILLWEELDAWAEKH-ERLKV------------- 611

Query: 262 YSVGFITESILREHVPEGSDDTLALACGPPPMIQFAVQPNLEKMNYDIKDSLLVF 316
             +GFITESILREH+P  S DTLALACGPPPMIQFAVQPNLEK+ YDIK+SLLVF
Sbjct: 612 --LGFITESILREHIPSASGDTLALACGPPPMIQFAVQPNLEKLGYDIKNSLLVF 664



 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 45/90 (50%), Gaps = 33/90 (36%)

Query: 1   MLEDYRIGELXXXXXXXXXXXXXXXXXXVHGASDMTQTHLAPIKEVSFAPVRNIALIPRE 60
           +LEDYRIGEL                        MT  + +     S A   N + IP  
Sbjct: 512 LLEDYRIGEL------------------------MTTGYTSD----SSASSPNTSKIP-- 541

Query: 61  KISCKLIKKESLSHDVRLFRFALPSEDQVL 90
              CKL+ K+S+SHDVR FRFALPSEDQ++
Sbjct: 542 ---CKLVSKDSISHDVRRFRFALPSEDQII 568


>GSVIVT01015504001 assembled CDS
          Length = 326

 Score =  157 bits (397), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 147/248 (59%), Gaps = 28/248 (11%)

Query: 54  IALIPREKISCKLIKKESLSHDVRLFRFALPSEDQVLGLPVGKHIYLCATIED------K 107
           +AL P + +  KL    S+SH+ +LFRF+     + LGL +   I   A I        K
Sbjct: 69  VALNPDKWLEFKLQDTASVSHNTQLFRFSFDPTAK-LGLDIASCILTRAPIGQDDEGKIK 127

Query: 108 LCMRAYTPTSTIEAVGYFDLVIKIYFKGVHPKFPNGGLMSQYLNSLQLGASIDVKGPLGH 167
             +R YTP S  ++ GYFDL+IK+Y +G          MSQ+ + L+ G  I+VKGP+  
Sbjct: 128 YVIRPYTPISDPDSKGYFDLLIKVYPEGK---------MSQHFSHLKPGDIIEVKGPIEK 178

Query: 168 IEYVGRGKFMVHGKPKSAKKLTMLAGGTGITPIYQVVQAILKDPEDDTEMYVVYANRTED 227
           + Y           P   K++ M+AGGTGITP+ Q+++AILK+P+D T++ ++YAN + D
Sbjct: 179 LRYT----------PNMKKQIGMIAGGTGITPMLQIIEAILKNPDDKTQVSLIYANVSPD 228

Query: 228 DILLREELDSWAKEYSDRLKVWYVVQESIKEGWQYSVGFITESILREHVPEGSDDTLALA 287
           DILL+++LD  A  + + LK++Y V ++    W+   G+I++ ++ + +P  SDD+L L 
Sbjct: 229 DILLKKKLDMLAATHPN-LKIFYTV-DNPSNNWRGGTGYISKDMVVKGLPAPSDDSLILV 286

Query: 288 CGPPPMIQ 295
           CGPP M++
Sbjct: 287 CGPPGMMK 294