Jatropha Genome Database
- JcCB0471061.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0471061.10 - phase: 0 /pseudo
(136 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01024754001 assembled CDS 70 3e-13
GSVIVT01000563001 assembled CDS 69 7e-13
GSVIVT01000564001 assembled CDS 66 5e-12
GSVIVT01009854001 assembled CDS 65 7e-12
GSVIVT01009855001 assembled CDS 65 8e-12
GSVIVT01000567001 assembled CDS 64 3e-11
GSVIVT01024756001 assembled CDS 63 4e-11
GSVIVT01007618001 assembled CDS 55 1e-08
GSVIVT01037987001 assembled CDS 54 2e-08
GSVIVT01007610001 assembled CDS 52 1e-07
GSVIVT01007614001 assembled CDS 48 1e-06
GSVIVT01014637001 assembled CDS 47 4e-06
GSVIVT01008262001 assembled CDS 46 5e-06
GSVIVT01009849001 assembled CDS 46 7e-06
>GSVIVT01024754001 assembled CDS
Length = 524
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELER 59
+LL L +PT +ISSA+ AKEVLKT+D+DCCSR G KRL++++L++ FSPYS+ R
Sbjct: 87 LLLQLGRIPTLLISSADMAKEVLKTHDIDCCSRAPSQGPKRLSYNFLDMCFSPYSDYWR 145
>GSVIVT01000563001 assembled CDS
Length = 858
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 8 LPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELERD 60
+PT V+SSAEAA+E LKT+D+DCCSRP LVG + ++++ +I F+PY + R+
Sbjct: 342 VPTVVVSSAEAAREFLKTHDIDCCSRPPLVGLGKFSYNHQDIGFAPYGDYWRE 394
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 5/51 (9%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAF 51
MLL L +PT V+SSAEAA+E LKT+D+DCCSRP L G T D LE +F
Sbjct: 1 MLLQL-GVPTVVVSSAEAAREFLKTHDIDCCSRPPLGG----TQDLLERSF 46
>GSVIVT01000564001 assembled CDS
Length = 449
Score = 65.9 bits (159), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Query: 5 LVPLPTP---VISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELERD 60
L P PT ++SSAEAA+E LKT+D+DCCSRP LVG + ++++ +I+F+PY + R+
Sbjct: 36 LPPGPTKLPIIVSSAEAAREFLKTHDIDCCSRPPLVGLGKFSYNHRDISFAPYGDYWRE 94
>GSVIVT01009854001 assembled CDS
Length = 912
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELERD 60
M L L +PT V+SSA AKEV+KT+DL+ SRP L+G +RL+++ L++AFSPY++ R+
Sbjct: 481 MSLRLGFIPTIVVSSARIAKEVMKTHDLEFASRPSLIGPQRLSYNCLDLAFSPYNDYWRE 540
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELERD 60
M L L +PT V+SSA AKEV+KT+DL SRP L+G +RL+++ L++AFSPY++ R+
Sbjct: 67 MSLRLGFIPTIVVSSARIAKEVMKTHDLKFASRPSLIGPRRLSYNCLDLAFSPYNDYWRE 126
>GSVIVT01009855001 assembled CDS
Length = 396
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELERD 60
M L L +PT V+SSA+ AKEV+KT DL+ SRP L+G +RL+++ L++AFSPY++ R+
Sbjct: 65 MSLRLGFVPTIVVSSAKIAKEVMKTQDLEFASRPSLIGQQRLSYNGLDLAFSPYNDYWRE 124
>GSVIVT01000567001 assembled CDS
Length = 555
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 38/48 (79%)
Query: 13 ISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELERD 60
+SSAEAAK+VLK +D+ CCSRP L+ RL+++YL+I+F+PY R+
Sbjct: 45 VSSAEAAKKVLKDHDISCCSRPPLISIGRLSYNYLDISFAPYGPYWRE 92
>GSVIVT01024756001 assembled CDS
Length = 531
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSE 56
M L L +PT VISSA+ A++VL+T D CCSRP G+K L++++L++AF+PYS+
Sbjct: 87 MFLQLGSIPTIVISSADMAEQVLRTRDNCCCSRPSSPGSKLLSYNFLDLAFAPYSD 142
>GSVIVT01007618001 assembled CDS
Length = 457
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELER 59
MLL L + T V+SS +AA+E++KT+DL +RP++ KRL +DY +++ +PY E R
Sbjct: 23 MLLQLGRVRTLVVSSPDAAQEIMKTHDLIFANRPKMSLGKRLLYDYKDVSVAPYGEYWR 81
>GSVIVT01037987001 assembled CDS
Length = 398
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELER 59
M L L + T +ISS + AK+V+KT+D++ RP L+ +K L++D ++I FSPY + R
Sbjct: 1 MSLQLGEVSTLIISSPDMAKQVMKTHDINFAQRPPLLASKILSYDSMDIVFSPYGDYWR 59
>GSVIVT01007610001 assembled CDS
Length = 527
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELER 59
MLLH +P ++S+A+AA+E++KT D+ +RP+ +L +DY +++ +PY E R
Sbjct: 80 MLLHFGKVPVVIVSAADAAREIMKTNDVIFLNRPKSSIFAKLLYDYKDVSMAPYGEYWR 138
>GSVIVT01007614001 assembled CDS
Length = 485
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELERD 60
MLLH +P ++S+ +AA+E++KT D +RP+ + +L +DY +++ +PY E R
Sbjct: 112 MLLHFGRVPVVIVSAVDAAREIMKTNDAIFSNRPKSNISAKLLYDYKDVSTAPYGEYWRQ 171
>GSVIVT01014637001 assembled CDS
Length = 1345
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELERD 60
M L L + V+SS E AKEV+KT+D+ RP ++ A +++D +IAF+PY ++
Sbjct: 122 MHLQLGEVSAIVVSSREMAKEVMKTHDIIFSQRPCILAASIVSYDCTDIAFAPYGVSLQE 181
Query: 61 G 61
G
Sbjct: 182 G 182
>GSVIVT01008262001 assembled CDS
Length = 1049
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYLEIAFSPYSELERD 60
M + L +PT ++SSA+A K LKT+D+ SRP+L + LT+ IAFS Y R+
Sbjct: 595 MYMRLGCVPTVIVSSAQATKLFLKTHDVVFASRPKLQAFEHLTYGTKGIAFSEYGPYWRN 654
>GSVIVT01009849001 assembled CDS
Length = 338
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 1 MLLHLVPLPTPVISSAEAAKEVLKTYDLDCCSRPRLVGAKRLTHDYL 47
M L L +PT V+SSA AKEV+KT+DL+ RP ++G K H+ L
Sbjct: 94 MFLRLGFVPTLVVSSARMAKEVMKTHDLEFSGRPSMLGLKNRFHELL 140