Jatropha Genome Database

JcCB0470911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0470911.10 + phase: 0 /partial
         (143 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008339001 assembled CDS                                       243   2e-65

>GSVIVT01008339001 assembled CDS
          Length = 187

 Score =  243 bits (620), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/142 (81%), Positives = 127/142 (89%)

Query: 1   MLKIPKHQVAGHKASDGLLGPLIDDSGRFYKPLQSDERGSKEVAFYTSFSSNAMVPEHIR 60
           MLK+P HQVAGH A DG LGPLIDDSGRFYKPLQ DERGSKEVAFYTSFSSNA +P+HIR
Sbjct: 1   MLKVPDHQVAGHHARDGKLGPLIDDSGRFYKPLQGDERGSKEVAFYTSFSSNARIPDHIR 60

Query: 61  KFFPIFYGTQLLEASDGSGLCPHIVLQDVVSNLLHPSIMDVKIGSRTWYPQAPEDYIHKC 120
           +FFPIFYGTQLLEASDGSGL PH+VLQDVVS   +P I+DVKIGSRTWY QA EDYI + 
Sbjct: 61  RFFPIFYGTQLLEASDGSGLYPHLVLQDVVSGCHNPCIIDVKIGSRTWYLQASEDYIQRS 120

Query: 121 LKKDRETSSLSLGFRISGLQLY 142
           LKKDRET++LSLGFRISGLQ+Y
Sbjct: 121 LKKDRETTTLSLGFRISGLQIY 142