Jatropha Genome Database

JcCB0470521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0470521.10 + phase: 0 
         (86 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024029001 assembled CDS                                       120   1e-28
GSVIVT01009947001 assembled CDS                                       114   1e-26
GSVIVT01020653001 assembled CDS                                       103   1e-23
GSVIVT01018729001 assembled CDS                                        99   4e-22
GSVIVT01018319001 assembled CDS                                        99   5e-22
GSVIVT01015359001 assembled CDS                                        96   4e-21
GSVIVT01007804001 assembled CDS                                        94   2e-20

>GSVIVT01024029001 assembled CDS
          Length = 198

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/61 (93%), Positives = 58/61 (95%)

Query: 10  NLRDDDQFFIDHPGAAPITTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIKVVLQP 69
           +LRDD QFFIDHPGA PITTAQGEELRKLIGAPAYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 70  P 70
           P
Sbjct: 181 P 181


>GSVIVT01009947001 assembled CDS
          Length = 197

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/77 (76%), Positives = 64/77 (83%)

Query: 10  NLRDDDQFFIDHPGAAPITTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIKVVLQP 69
           +LRDD QFF+DHPGA PITTAQGEEL+K+IGAPAYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFVDHPGAVPITTAQGEELKKVIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 70  PXXXXXXXXGQTSCSIL 86
           P         Q +CSIL
Sbjct: 181 PKQKKKKKKAQKTCSIL 197


>GSVIVT01020653001 assembled CDS
          Length = 196

 Score =  103 bits (258), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 53/59 (89%)

Query: 10  NLRDDDQFFIDHPGAAPITTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIKVVLQ 68
           +LR+D QF IDHPGA PITTAQGE+L+K+IGA  YIECSSKTQQNVK VFDAAIKVVLQ
Sbjct: 121 DLREDKQFLIDHPGATPITTAQGEDLKKMIGAAVYIECSSKTQQNVKAVFDAAIKVVLQ 179


>GSVIVT01018729001 assembled CDS
          Length = 196

 Score = 99.0 bits (245), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 52/58 (89%)

Query: 10  NLRDDDQFFIDHPGAAPITTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIKVVL 67
           +LR+D QFFIDHPGA PI+ AQGEEL++LI APAYIECS+KTQQN+K VFD AI+VVL
Sbjct: 121 DLREDKQFFIDHPGAVPISAAQGEELKRLIDAPAYIECSAKTQQNIKAVFDQAIRVVL 178


>GSVIVT01018319001 assembled CDS
          Length = 198

 Score = 98.6 bits (244), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 10  NLRDDDQFFIDHPGAAPITTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIKVVLQP 69
           +LR+D QF +D+PGA  I+T QGEEL+K IGA AYIECSSKTQQNVK VFDAAIKVVLQP
Sbjct: 123 DLREDKQFHMDYPGACTISTEQGEELKKQIGALAYIECSSKTQQNVKAVFDAAIKVVLQP 182

Query: 70  P 70
           P
Sbjct: 183 P 183


>GSVIVT01015359001 assembled CDS
          Length = 210

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 10  NLRDDDQFFIDHPGAAPITTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIKVVLQP 69
           +LR+D  +  DH G+  IT+AQGEELRK IGA AYIECSSKTQQNVK VFD AIKVVLQP
Sbjct: 121 DLREDKGYLADHMGSNVITSAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 180

Query: 70  PXXXXXXXXGQ---TSCSIL 86
           P         +   T CSI+
Sbjct: 181 PRRKEVARKKRRRSTGCSIV 200


>GSVIVT01007804001 assembled CDS
          Length = 210

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 48/58 (82%)

Query: 10  NLRDDDQFFIDHPGAAPITTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIKVVL 67
           +LR+D  +  DHPG  P+TTAQGEELRK IGA  YIECSSKTQQNVK VFDAAIKVV+
Sbjct: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 180