Jatropha Genome Database

JcCB0469141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0469141.10 + phase: 2 /pseudo/partial
         (99 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028646001 assembled CDS                                        54   2e-08
GSVIVT01026712001 assembled CDS                                        49   5e-07

>GSVIVT01028646001 assembled CDS
          Length = 779

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%), Gaps = 1/40 (2%)

Query: 1   LKHSNPMDSETSQPLLDA-RMCLLKPATNHPGQLVQGNSG 39
           +KH + MDSETS  L+DA RM LLK ATNH  QLVQGNSG
Sbjct: 150 MKHPHSMDSETSPALIDANRMALLKSATNHQSQLVQGNSG 189


>GSVIVT01026712001 assembled CDS
          Length = 97

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 1  LKHSNPMDSETSQPLLDA-RMCLLKPATNHPGQLVQGNS 38
          +KH + MD ETS  L+DA RM LLK ATNH  QLVQGNS
Sbjct: 6  IKHPHSMDLETSPTLIDANRMALLKSATNHQSQLVQGNS 44